Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20295

Experiment: Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20290 and BPHYT_RS20295 overlap by 4 nucleotidesBPHYT_RS20295 and BPHYT_RS20300 are separated by 415 nucleotides BPHYT_RS20290: BPHYT_RS20290 - LysR family transcriptional regulator, at 111,631 to 112,569 _RS20290 BPHYT_RS20295: BPHYT_RS20295 - ligand-gated channel, at 112,566 to 114,749 _RS20295 BPHYT_RS20300: BPHYT_RS20300 - isocitrate dehydrogenase, at 115,165 to 117,393 _RS20300 Position (kb) 112 113 114 115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 111.826 kb on + strand, within BPHYT_RS20290at 111.829 kb on + strand, within BPHYT_RS20290at 112.368 kb on - strand, within BPHYT_RS20290at 112.621 kb on + strandat 112.621 kb on + strandat 112.625 kb on - strandat 112.792 kb on + strand, within BPHYT_RS20295at 112.793 kb on - strand, within BPHYT_RS20295at 112.793 kb on - strand, within BPHYT_RS20295at 112.879 kb on + strand, within BPHYT_RS20295at 113.051 kb on - strand, within BPHYT_RS20295at 113.051 kb on - strand, within BPHYT_RS20295at 113.056 kb on + strand, within BPHYT_RS20295at 113.164 kb on + strand, within BPHYT_RS20295at 113.215 kb on + strand, within BPHYT_RS20295at 113.216 kb on - strand, within BPHYT_RS20295at 113.216 kb on - strand, within BPHYT_RS20295at 113.216 kb on - strand, within BPHYT_RS20295at 113.225 kb on - strand, within BPHYT_RS20295at 113.291 kb on - strand, within BPHYT_RS20295at 113.321 kb on - strand, within BPHYT_RS20295at 113.343 kb on - strand, within BPHYT_RS20295at 113.379 kb on - strand, within BPHYT_RS20295at 113.379 kb on - strand, within BPHYT_RS20295at 113.379 kb on - strand, within BPHYT_RS20295at 113.379 kb on - strand, within BPHYT_RS20295at 113.509 kb on + strand, within BPHYT_RS20295at 113.510 kb on - strand, within BPHYT_RS20295at 113.539 kb on + strand, within BPHYT_RS20295at 113.638 kb on + strand, within BPHYT_RS20295at 113.639 kb on - strand, within BPHYT_RS20295at 113.639 kb on - strand, within BPHYT_RS20295at 113.644 kb on + strand, within BPHYT_RS20295at 113.644 kb on + strand, within BPHYT_RS20295at 113.663 kb on - strand, within BPHYT_RS20295at 113.825 kb on - strand, within BPHYT_RS20295at 113.935 kb on + strand, within BPHYT_RS20295at 114.136 kb on + strand, within BPHYT_RS20295at 114.187 kb on + strand, within BPHYT_RS20295at 114.187 kb on + strand, within BPHYT_RS20295at 114.188 kb on - strand, within BPHYT_RS20295at 114.188 kb on - strand, within BPHYT_RS20295at 114.220 kb on + strand, within BPHYT_RS20295at 114.419 kb on - strand, within BPHYT_RS20295at 114.419 kb on - strand, within BPHYT_RS20295at 114.844 kb on - strandat 114.868 kb on + strandat 114.923 kb on - strandat 114.937 kb on - strandat 114.937 kb on - strandat 115.026 kb on - strandat 115.041 kb on + strandat 115.043 kb on + strandat 115.137 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.25 mM
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111,826 + BPHYT_RS20290 0.21 -0.0
111,829 + BPHYT_RS20290 0.21 +0.2
112,368 - BPHYT_RS20290 0.78 -0.4
112,621 + -0.6
112,621 + -0.7
112,625 - -1.0
112,792 + BPHYT_RS20295 0.10 -0.6
112,793 - BPHYT_RS20295 0.10 -1.4
112,793 - BPHYT_RS20295 0.10 +1.5
112,879 + BPHYT_RS20295 0.14 -0.6
113,051 - BPHYT_RS20295 0.22 -0.1
113,051 - BPHYT_RS20295 0.22 -0.0
113,056 + BPHYT_RS20295 0.22 -0.3
113,164 + BPHYT_RS20295 0.27 +0.0
113,215 + BPHYT_RS20295 0.30 -0.5
113,216 - BPHYT_RS20295 0.30 -0.4
113,216 - BPHYT_RS20295 0.30 -0.1
113,216 - BPHYT_RS20295 0.30 -0.5
113,225 - BPHYT_RS20295 0.30 -0.5
113,291 - BPHYT_RS20295 0.33 -0.0
113,321 - BPHYT_RS20295 0.35 -0.1
113,343 - BPHYT_RS20295 0.36 -0.3
113,379 - BPHYT_RS20295 0.37 -0.7
113,379 - BPHYT_RS20295 0.37 -0.6
113,379 - BPHYT_RS20295 0.37 -1.1
113,379 - BPHYT_RS20295 0.37 -0.7
113,509 + BPHYT_RS20295 0.43 -1.4
113,510 - BPHYT_RS20295 0.43 -0.0
113,539 + BPHYT_RS20295 0.45 +0.4
113,638 + BPHYT_RS20295 0.49 -0.2
113,639 - BPHYT_RS20295 0.49 -0.3
113,639 - BPHYT_RS20295 0.49 -1.3
113,644 + BPHYT_RS20295 0.49 -0.1
113,644 + BPHYT_RS20295 0.49 -0.9
113,663 - BPHYT_RS20295 0.50 +0.2
113,825 - BPHYT_RS20295 0.58 -0.6
113,935 + BPHYT_RS20295 0.63 +0.4
114,136 + BPHYT_RS20295 0.72 -0.1
114,187 + BPHYT_RS20295 0.74 -2.8
114,187 + BPHYT_RS20295 0.74 -0.8
114,188 - BPHYT_RS20295 0.74 -0.7
114,188 - BPHYT_RS20295 0.74 +1.0
114,220 + BPHYT_RS20295 0.76 -0.8
114,419 - BPHYT_RS20295 0.85 -0.2
114,419 - BPHYT_RS20295 0.85 -0.8
114,844 - +0.3
114,868 + -0.4
114,923 - -0.6
114,937 - -0.1
114,937 - +0.9
115,026 - -0.7
115,041 + +2.3
115,043 + -1.0
115,137 + +0.2

Or see this region's nucleotide sequence