Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14875

Experiment: Cobalt chloride 0.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14870 and BPHYT_RS14875 are separated by 67 nucleotidesBPHYT_RS14875 and BPHYT_RS14880 are separated by 471 nucleotidesBPHYT_RS14880 and BPHYT_RS14885 are separated by 21 nucleotides BPHYT_RS14870: BPHYT_RS14870 - hypothetical protein, at 3,382,413 to 3,383,588 _RS14870 BPHYT_RS14875: BPHYT_RS14875 - membrane protein, at 3,383,656 to 3,383,949 _RS14875 BPHYT_RS14880: BPHYT_RS14880 - integration host factor subunit beta, at 3,384,421 to 3,384,744 _RS14880 BPHYT_RS14885: BPHYT_RS14885 - 30S ribosomal protein S1, at 3,384,766 to 3,386,499 _RS14885 Position (kb) 3383 3384Strain fitness (log2 ratio) -3 -2 -1 0 1at 3383.595 kb on - strandat 3383.595 kb on - strandat 3383.595 kb on - strandat 3383.595 kb on - strandat 3383.604 kb on - strandat 3383.604 kb on - strandat 3383.941 kb on - strandat 3384.037 kb on - strandat 3384.041 kb on + strandat 3384.042 kb on - strandat 3384.089 kb on - strandat 3384.142 kb on + strandat 3384.315 kb on + strandat 3384.315 kb on + strandat 3384.316 kb on - strandat 3384.316 kb on - strandat 3384.475 kb on + strand, within BPHYT_RS14880at 3384.476 kb on - strand, within BPHYT_RS14880at 3384.745 kb on - strandat 3384.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.25 mM
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3,383,595 - -0.1
3,383,595 - -0.3
3,383,595 - +0.4
3,383,595 - +1.5
3,383,604 - +1.1
3,383,604 - -0.1
3,383,941 - -0.3
3,384,037 - -1.1
3,384,041 + -1.1
3,384,042 - +0.0
3,384,089 - -0.7
3,384,142 + -3.0
3,384,315 + +0.3
3,384,315 + +0.2
3,384,316 - -0.0
3,384,316 - -0.2
3,384,475 + BPHYT_RS14880 0.17 -0.7
3,384,476 - BPHYT_RS14880 0.17 -0.4
3,384,745 - -0.9
3,384,768 - -0.7

Or see this region's nucleotide sequence