Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_28540

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_28535 and AO356_28540 are separated by 17 nucleotidesAO356_28540 and AO356_28545 are separated by 78 nucleotides AO356_28535: AO356_28535 - mannitol dehydrogenase, at 6,631,865 to 6,633,322 _28535 AO356_28540: AO356_28540 - D-mannose transporter (from data), at 6,633,340 to 6,634,632 _28540 AO356_28545: AO356_28545 - alcohol dehydrogenase, at 6,634,711 to 6,635,742 _28545 Position (kb) 6633 6634 6635Strain fitness (log2 ratio) -2 -1 0 1 2at 6632.353 kb on - strand, within AO356_28535at 6632.430 kb on + strand, within AO356_28535at 6633.039 kb on + strand, within AO356_28535at 6633.039 kb on + strand, within AO356_28535at 6633.039 kb on + strand, within AO356_28535at 6633.039 kb on + strand, within AO356_28535at 6633.040 kb on - strand, within AO356_28535at 6633.040 kb on - strand, within AO356_28535at 6633.222 kb on + strandat 6633.422 kb on + strandat 6633.423 kb on - strandat 6633.620 kb on + strand, within AO356_28540at 6633.621 kb on - strand, within AO356_28540at 6633.638 kb on + strand, within AO356_28540at 6633.687 kb on + strand, within AO356_28540at 6633.687 kb on + strand, within AO356_28540at 6633.688 kb on - strand, within AO356_28540at 6633.688 kb on - strand, within AO356_28540at 6633.899 kb on + strand, within AO356_28540at 6633.935 kb on + strand, within AO356_28540at 6633.935 kb on + strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.936 kb on - strand, within AO356_28540at 6633.939 kb on + strand, within AO356_28540at 6633.940 kb on - strand, within AO356_28540at 6633.941 kb on + strand, within AO356_28540at 6634.134 kb on + strand, within AO356_28540at 6634.134 kb on + strand, within AO356_28540at 6634.157 kb on + strand, within AO356_28540at 6634.157 kb on + strand, within AO356_28540at 6634.260 kb on - strand, within AO356_28540at 6634.467 kb on - strand, within AO356_28540at 6634.572 kb on - strandat 6634.615 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
6,632,353 - AO356_28535 0.33 -0.1
6,632,430 + AO356_28535 0.39 +1.4
6,633,039 + AO356_28535 0.81 +1.4
6,633,039 + AO356_28535 0.81 +0.0
6,633,039 + AO356_28535 0.81 -0.4
6,633,039 + AO356_28535 0.81 -0.4
6,633,040 - AO356_28535 0.81 +0.9
6,633,040 - AO356_28535 0.81 +0.4
6,633,222 + -2.4
6,633,422 + +0.8
6,633,423 - -1.6
6,633,620 + AO356_28540 0.22 -0.2
6,633,621 - AO356_28540 0.22 +1.2
6,633,638 + AO356_28540 0.23 -0.3
6,633,687 + AO356_28540 0.27 +1.0
6,633,687 + AO356_28540 0.27 -0.3
6,633,688 - AO356_28540 0.27 -0.3
6,633,688 - AO356_28540 0.27 +0.1
6,633,899 + AO356_28540 0.43 +0.0
6,633,935 + AO356_28540 0.46 +0.8
6,633,935 + AO356_28540 0.46 +0.0
6,633,936 - AO356_28540 0.46 -1.0
6,633,936 - AO356_28540 0.46 -0.4
6,633,936 - AO356_28540 0.46 -0.9
6,633,936 - AO356_28540 0.46 +0.2
6,633,939 + AO356_28540 0.46 +0.5
6,633,940 - AO356_28540 0.46 +2.1
6,633,941 + AO356_28540 0.46 -0.2
6,634,134 + AO356_28540 0.61 +1.9
6,634,134 + AO356_28540 0.61 +0.1
6,634,157 + AO356_28540 0.63 -0.3
6,634,157 + AO356_28540 0.63 -0.7
6,634,260 - AO356_28540 0.71 -0.4
6,634,467 - AO356_28540 0.87 +0.5
6,634,572 - -0.8
6,634,615 - -0.5

Or see this region's nucleotide sequence