Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25815

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25810 and AO356_25815 are separated by 10 nucleotidesAO356_25815 and AO356_25820 are separated by 2 nucleotidesAO356_25820 and AO356_25825 are separated by 39 nucleotides AO356_25810: AO356_25810 - biopolymer transporter ExbB, at 5,836,152 to 5,837,951 _25810 AO356_25815: AO356_25815 - biopolymer transporter ExbD, at 5,837,962 to 5,838,387 _25815 AO356_25820: AO356_25820 - energy transducer TonB, at 5,838,390 to 5,839,094 _25820 AO356_25825: AO356_25825 - hypothetical protein, at 5,839,134 to 5,840,825 _25825 Position (kb) 5837 5838 5839Strain fitness (log2 ratio) -1 0 1at 5836.971 kb on + strand, within AO356_25810at 5837.457 kb on + strand, within AO356_25810at 5837.458 kb on - strand, within AO356_25810at 5837.458 kb on - strand, within AO356_25810at 5837.458 kb on - strand, within AO356_25810at 5837.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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5,836,971 + AO356_25810 0.46 -0.1
5,837,457 + AO356_25810 0.72 -1.2
5,837,458 - AO356_25810 0.73 +0.1
5,837,458 - AO356_25810 0.73 -0.4
5,837,458 - AO356_25810 0.73 -0.4
5,837,973 - -0.3

Or see this region's nucleotide sequence