Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18485

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18475 and AO356_18480 are separated by 7 nucleotidesAO356_18480 and AO356_18485 are separated by 107 nucleotidesAO356_18485 and AO356_18490 are separated by 1 nucleotidesAO356_18490 and AO356_18495 are separated by 87 nucleotides AO356_18475: AO356_18475 - chemotaxis protein CheY, at 4,159,577 to 4,160,254 _18475 AO356_18480: AO356_18480 - translation initiation factor 2, at 4,160,262 to 4,160,672 _18480 AO356_18485: AO356_18485 - hypothetical protein, at 4,160,780 to 4,161,079 _18485 AO356_18490: AO356_18490 - septation protein A, at 4,161,081 to 4,161,677 _18490 AO356_18495: AO356_18495 - phosphoesterase, at 4,161,765 to 4,162,628 _18495 Position (kb) 4160 4161 4162Strain fitness (log2 ratio) -2 -1 0 1 2at 4159.959 kb on + strand, within AO356_18475at 4159.960 kb on - strand, within AO356_18475at 4160.234 kb on + strandat 4160.234 kb on + strandat 4160.234 kb on + strandat 4160.234 kb on + strandat 4160.234 kb on + strandat 4160.235 kb on - strandat 4160.235 kb on - strandat 4160.235 kb on - strandat 4160.235 kb on - strandat 4160.235 kb on - strandat 4160.235 kb on - strandat 4160.235 kb on - strandat 4160.240 kb on + strandat 4160.241 kb on - strandat 4160.241 kb on - strandat 4160.268 kb on + strandat 4160.269 kb on - strandat 4160.288 kb on + strandat 4160.288 kb on + strandat 4160.288 kb on + strandat 4160.288 kb on + strandat 4160.288 kb on + strandat 4160.289 kb on - strandat 4160.309 kb on + strand, within AO356_18480at 4160.310 kb on - strand, within AO356_18480at 4160.328 kb on + strand, within AO356_18480at 4160.699 kb on + strandat 4160.699 kb on + strandat 4160.700 kb on - strandat 4160.726 kb on - strandat 4160.781 kb on + strandat 4160.781 kb on + strandat 4160.823 kb on + strand, within AO356_18485at 4161.072 kb on + strandat 4161.072 kb on + strandat 4161.073 kb on - strandat 4161.073 kb on - strandat 4161.073 kb on - strandat 4161.073 kb on - strandat 4161.708 kb on + strandat 4161.709 kb on - strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.711 kb on + strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.712 kb on - strandat 4161.753 kb on + strandat 4161.754 kb on - strandat 4161.754 kb on - strandat 4161.788 kb on + strandat 4161.788 kb on + strandat 4161.789 kb on - strandat 4161.962 kb on + strand, within AO356_18495at 4161.962 kb on + strand, within AO356_18495at 4161.962 kb on + strand, within AO356_18495at 4161.962 kb on + strand, within AO356_18495at 4161.963 kb on - strand, within AO356_18495at 4161.996 kb on + strand, within AO356_18495at 4161.996 kb on + strand, within AO356_18495at 4161.996 kb on + strand, within AO356_18495at 4161.997 kb on - strand, within AO356_18495

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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4,159,959 + AO356_18475 0.56 +0.5
4,159,960 - AO356_18475 0.56 +0.7
4,160,234 + +1.6
4,160,234 + -0.2
4,160,234 + +0.2
4,160,234 + -1.8
4,160,234 + +0.2
4,160,235 - +0.2
4,160,235 - +0.2
4,160,235 - -0.1
4,160,235 - -0.6
4,160,235 - -0.5
4,160,235 - +1.0
4,160,235 - -0.7
4,160,240 + -0.0
4,160,241 - -0.7
4,160,241 - -1.5
4,160,268 + +0.4
4,160,269 - +0.3
4,160,288 + -0.1
4,160,288 + -1.5
4,160,288 + -0.8
4,160,288 + +0.5
4,160,288 + +0.0
4,160,289 - -0.6
4,160,309 + AO356_18480 0.11 -1.3
4,160,310 - AO356_18480 0.12 +0.7
4,160,328 + AO356_18480 0.16 -1.3
4,160,699 + +0.5
4,160,699 + -0.4
4,160,700 - -0.7
4,160,726 - -0.2
4,160,781 + -0.4
4,160,781 + -0.0
4,160,823 + AO356_18485 0.14 -0.9
4,161,072 + +0.4
4,161,072 + +0.1
4,161,073 - -0.2
4,161,073 - +0.6
4,161,073 - +0.6
4,161,073 - -0.9
4,161,708 + -0.3
4,161,709 - +0.2
4,161,711 + +0.1
4,161,711 + +0.3
4,161,711 + +2.5
4,161,711 + +0.6
4,161,711 + +0.3
4,161,711 + +1.5
4,161,711 + -1.3
4,161,711 + -2.3
4,161,711 + +0.9
4,161,712 - -0.7
4,161,712 - -2.0
4,161,712 - +0.2
4,161,712 - +0.6
4,161,712 - -0.7
4,161,712 - +0.6
4,161,712 - -0.1
4,161,712 - +0.3
4,161,712 - -0.9
4,161,753 + -0.5
4,161,754 - +2.0
4,161,754 - -0.1
4,161,788 + -0.7
4,161,788 + +0.3
4,161,789 - -0.0
4,161,962 + AO356_18495 0.23 +0.5
4,161,962 + AO356_18495 0.23 -0.5
4,161,962 + AO356_18495 0.23 -0.4
4,161,962 + AO356_18495 0.23 -0.6
4,161,963 - AO356_18495 0.23 -0.6
4,161,996 + AO356_18495 0.27 +0.4
4,161,996 + AO356_18495 0.27 +1.2
4,161,996 + AO356_18495 0.27 +0.1
4,161,997 - AO356_18495 0.27 +0.4

Or see this region's nucleotide sequence