Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_11740 and AO356_11745 are separated by 327 nucleotides AO356_11745 and AO356_11750 overlap by 8 nucleotides AO356_11750 and AO356_11755 are separated by 3 nucleotides AO356_11755 and AO356_11760 overlap by 11 nucleotides
AO356_11740: AO356_11740 - glucosamine--fructose-6-phosphate aminotransferase, at 2,658,466 to 2,660,298
_11740
AO356_11745: AO356_11745 - hypothetical protein, at 2,660,626 to 2,661,084
_11745
AO356_11750: AO356_11750 - toxin HipA, at 2,661,077 to 2,662,333
_11750
AO356_11755: AO356_11755 - ADP-ribose pyrophosphatase, at 2,662,337 to 2,663,044
_11755
AO356_11760: AO356_11760 - cytidyltransferase, at 2,663,034 to 2,663,591
_11760
Position (kb)
2661
2662
2663 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.333 kb on + strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.334 kb on - strand at 2660.337 kb on + strand at 2660.337 kb on + strand at 2660.337 kb on + strand at 2660.338 kb on - strand at 2660.338 kb on - strand at 2660.338 kb on - strand at 2660.338 kb on - strand at 2660.356 kb on + strand at 2660.357 kb on - strand at 2660.366 kb on - strand at 2660.399 kb on + strand at 2660.400 kb on - strand at 2660.416 kb on + strand at 2660.416 kb on + strand at 2660.416 kb on + strand at 2660.417 kb on - strand at 2660.417 kb on - strand at 2660.417 kb on - strand at 2660.813 kb on - strand, within AO356_11745 at 2660.813 kb on - strand, within AO356_11745 at 2661.065 kb on + strand at 2661.065 kb on + strand at 2661.098 kb on + strand at 2661.172 kb on + strand at 2661.173 kb on - strand at 2661.173 kb on - strand at 2661.248 kb on + strand, within AO356_11750 at 2661.249 kb on - strand, within AO356_11750 at 2661.292 kb on - strand, within AO356_11750 at 2661.369 kb on + strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.402 kb on - strand, within AO356_11750 at 2661.645 kb on + strand, within AO356_11750 at 2661.645 kb on + strand, within AO356_11750 at 2661.645 kb on + strand, within AO356_11750 at 2661.645 kb on + strand, within AO356_11750 at 2661.645 kb on + strand, within AO356_11750 at 2661.645 kb on + strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.646 kb on - strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.648 kb on + strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.649 kb on - strand, within AO356_11750 at 2661.688 kb on + strand, within AO356_11750 at 2661.688 kb on + strand, within AO356_11750 at 2661.689 kb on - strand, within AO356_11750 at 2661.691 kb on + strand, within AO356_11750 at 2661.691 kb on + strand, within AO356_11750 at 2661.691 kb on + strand, within AO356_11750 at 2661.691 kb on + strand, within AO356_11750 at 2661.692 kb on - strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.758 kb on + strand, within AO356_11750 at 2661.759 kb on - strand, within AO356_11750 at 2661.759 kb on - strand, within AO356_11750 at 2661.759 kb on - strand, within AO356_11750 at 2661.759 kb on - strand, within AO356_11750 at 2661.759 kb on - strand, within AO356_11750 at 2661.759 kb on - strand, within AO356_11750 at 2661.786 kb on - strand, within AO356_11750 at 2661.786 kb on - strand, within AO356_11750 at 2661.797 kb on + strand, within AO356_11750 at 2661.797 kb on + strand, within AO356_11750 at 2661.798 kb on - strand, within AO356_11750 at 2661.815 kb on - strand, within AO356_11750 at 2661.815 kb on - strand, within AO356_11750 at 2661.917 kb on + strand, within AO356_11750 at 2661.917 kb on + strand, within AO356_11750 at 2661.917 kb on + strand, within AO356_11750 at 2661.917 kb on + strand, within AO356_11750 at 2661.917 kb on + strand, within AO356_11750 at 2661.918 kb on - strand, within AO356_11750 at 2661.918 kb on - strand, within AO356_11750 at 2661.918 kb on - strand, within AO356_11750 at 2661.918 kb on - strand, within AO356_11750 at 2661.936 kb on + strand, within AO356_11750 at 2661.936 kb on + strand, within AO356_11750 at 2661.936 kb on + strand, within AO356_11750 at 2661.936 kb on + strand, within AO356_11750 at 2661.936 kb on + strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2661.937 kb on - strand, within AO356_11750 at 2662.032 kb on + strand, within AO356_11750 at 2662.032 kb on + strand, within AO356_11750 at 2662.032 kb on + strand, within AO356_11750 at 2662.032 kb on + strand, within AO356_11750 at 2662.033 kb on - strand, within AO356_11750 at 2662.033 kb on - strand, within AO356_11750 at 2662.033 kb on - strand, within AO356_11750 at 2662.050 kb on + strand, within AO356_11750 at 2662.050 kb on + strand, within AO356_11750 at 2662.050 kb on + strand, within AO356_11750 at 2662.051 kb on - strand, within AO356_11750 at 2662.088 kb on + strand, within AO356_11750 at 2662.088 kb on + strand, within AO356_11750 at 2662.088 kb on + strand, within AO356_11750 at 2662.088 kb on + strand, within AO356_11750 at 2662.088 kb on + strand, within AO356_11750 at 2662.088 kb on + strand, within AO356_11750 at 2662.089 kb on - strand, within AO356_11750 at 2662.089 kb on - strand, within AO356_11750 at 2662.089 kb on - strand, within AO356_11750 at 2662.155 kb on + strand, within AO356_11750 at 2662.155 kb on + strand, within AO356_11750 at 2662.155 kb on + strand, within AO356_11750 at 2662.155 kb on + strand, within AO356_11750 at 2662.156 kb on - strand, within AO356_11750 at 2662.156 kb on - strand, within AO356_11750 at 2662.156 kb on - strand, within AO356_11750 at 2662.156 kb on - strand, within AO356_11750 at 2662.156 kb on - strand, within AO356_11750 at 2662.271 kb on + strand at 2662.338 kb on + strand at 2662.339 kb on - strand at 2662.339 kb on - strand at 2662.339 kb on - strand at 2662.339 kb on - strand at 2662.339 kb on - strand at 2662.339 kb on - strand at 2662.339 kb on - strand at 2663.014 kb on - strand at 2663.036 kb on - strand at 2663.061 kb on - strand at 2663.066 kb on - strand at 2663.074 kb on + strand at 2663.075 kb on - strand at 2663.075 kb on - strand at 2663.075 kb on - strand at 2663.075 kb on - strand at 2663.075 kb on - strand at 2663.079 kb on + strand at 2663.221 kb on + strand, within AO356_11760 at 2663.222 kb on - strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.320 kb on + strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.321 kb on - strand, within AO356_11760 at 2663.326 kb on + strand, within AO356_11760 at 2663.326 kb on + strand, within AO356_11760 at 2663.326 kb on + strand, within AO356_11760 at 2663.326 kb on + strand, within AO356_11760 at 2663.326 kb on + strand, within AO356_11760 at 2663.326 kb on + strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760 at 2663.327 kb on - strand, within AO356_11760
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 2,660,333 + -0.1 2,660,333 + -0.1 2,660,333 + -0.2 2,660,333 + +0.3 2,660,333 + +0.7 2,660,333 + +1.3 2,660,333 + +0.5 2,660,333 + +0.9 2,660,334 - +0.8 2,660,334 - +0.5 2,660,334 - +0.5 2,660,334 - -0.4 2,660,334 - -0.1 2,660,334 - +0.6 2,660,334 - -0.8 2,660,334 - -1.0 2,660,334 - +0.6 2,660,334 - +0.1 2,660,334 - +0.3 2,660,334 - +0.2 2,660,334 - +1.3 2,660,337 + -1.2 2,660,337 + +0.6 2,660,337 + +1.5 2,660,338 - -0.0 2,660,338 - -0.1 2,660,338 - -0.6 2,660,338 - +0.4 2,660,356 + +0.3 2,660,357 - -0.2 2,660,366 - +0.3 2,660,399 + -0.0 2,660,400 - -0.3 2,660,416 + +0.2 2,660,416 + +1.1 2,660,416 + +0.6 2,660,417 - +0.7 2,660,417 - -0.4 2,660,417 - -0.7 2,660,813 - AO356_11745 0.41 +1.1 2,660,813 - AO356_11745 0.41 +1.2 2,661,065 + +0.7 2,661,065 + +0.1 2,661,098 + +1.1 2,661,172 + -0.9 2,661,173 - +0.5 2,661,173 - +0.7 2,661,248 + AO356_11750 0.14 +0.9 2,661,249 - AO356_11750 0.14 +0.5 2,661,292 - AO356_11750 0.17 +0.6 2,661,369 + AO356_11750 0.23 +1.7 2,661,402 - AO356_11750 0.26 +0.2 2,661,402 - AO356_11750 0.26 +0.6 2,661,402 - AO356_11750 0.26 +0.3 2,661,402 - AO356_11750 0.26 +0.7 2,661,402 - AO356_11750 0.26 -0.1 2,661,402 - AO356_11750 0.26 +0.6 2,661,402 - AO356_11750 0.26 +0.4 2,661,645 + AO356_11750 0.45 +0.6 2,661,645 + AO356_11750 0.45 -0.2 2,661,645 + AO356_11750 0.45 -0.0 2,661,645 + AO356_11750 0.45 -0.2 2,661,645 + AO356_11750 0.45 +0.3 2,661,645 + AO356_11750 0.45 -0.1 2,661,646 - AO356_11750 0.45 -0.6 2,661,646 - AO356_11750 0.45 -0.1 2,661,646 - AO356_11750 0.45 +0.7 2,661,646 - AO356_11750 0.45 +0.3 2,661,646 - AO356_11750 0.45 +0.8 2,661,646 - AO356_11750 0.45 +0.3 2,661,646 - AO356_11750 0.45 +0.3 2,661,648 + AO356_11750 0.45 -1.6 2,661,648 + AO356_11750 0.45 +0.4 2,661,648 + AO356_11750 0.45 +0.3 2,661,648 + AO356_11750 0.45 +0.7 2,661,648 + AO356_11750 0.45 -0.3 2,661,648 + AO356_11750 0.45 +2.1 2,661,648 + AO356_11750 0.45 +1.4 2,661,648 + AO356_11750 0.45 +0.3 2,661,648 + AO356_11750 0.45 -1.1 2,661,648 + AO356_11750 0.45 +0.4 2,661,648 + AO356_11750 0.45 +0.3 2,661,648 + AO356_11750 0.45 -0.0 2,661,648 + AO356_11750 0.45 +0.2 2,661,648 + AO356_11750 0.45 -2.0 2,661,649 - AO356_11750 0.46 -0.3 2,661,649 - AO356_11750 0.46 -0.1 2,661,649 - AO356_11750 0.46 -0.7 2,661,649 - AO356_11750 0.46 -0.3 2,661,649 - AO356_11750 0.46 +1.2 2,661,649 - AO356_11750 0.46 +0.7 2,661,649 - AO356_11750 0.46 -0.2 2,661,649 - AO356_11750 0.46 -0.0 2,661,649 - AO356_11750 0.46 -0.2 2,661,649 - AO356_11750 0.46 +0.1 2,661,649 - AO356_11750 0.46 -0.0 2,661,649 - AO356_11750 0.46 +0.2 2,661,649 - AO356_11750 0.46 +0.3 2,661,649 - AO356_11750 0.46 +1.4 2,661,649 - AO356_11750 0.46 +0.1 2,661,649 - AO356_11750 0.46 -0.3 2,661,649 - AO356_11750 0.46 +0.3 2,661,688 + AO356_11750 0.49 -1.4 2,661,688 + AO356_11750 0.49 +0.4 2,661,689 - AO356_11750 0.49 +0.2 2,661,691 + AO356_11750 0.49 +0.7 2,661,691 + AO356_11750 0.49 -0.1 2,661,691 + AO356_11750 0.49 +0.7 2,661,691 + AO356_11750 0.49 -0.4 2,661,692 - AO356_11750 0.49 +0.7 2,661,758 + AO356_11750 0.54 -0.9 2,661,758 + AO356_11750 0.54 +0.1 2,661,758 + AO356_11750 0.54 -0.0 2,661,758 + AO356_11750 0.54 -0.7 2,661,758 + AO356_11750 0.54 +0.1 2,661,758 + AO356_11750 0.54 -0.8 2,661,758 + AO356_11750 0.54 +0.8 2,661,759 - AO356_11750 0.54 +1.2 2,661,759 - AO356_11750 0.54 -1.3 2,661,759 - AO356_11750 0.54 -0.3 2,661,759 - AO356_11750 0.54 -0.6 2,661,759 - AO356_11750 0.54 +0.8 2,661,759 - AO356_11750 0.54 +0.6 2,661,786 - AO356_11750 0.56 -0.2 2,661,786 - AO356_11750 0.56 +0.5 2,661,797 + AO356_11750 0.57 -0.3 2,661,797 + AO356_11750 0.57 +0.2 2,661,798 - AO356_11750 0.57 +0.4 2,661,815 - AO356_11750 0.59 -0.1 2,661,815 - AO356_11750 0.59 +1.4 2,661,917 + AO356_11750 0.67 +0.3 2,661,917 + AO356_11750 0.67 +0.5 2,661,917 + AO356_11750 0.67 -0.5 2,661,917 + AO356_11750 0.67 +0.1 2,661,917 + AO356_11750 0.67 +0.5 2,661,918 - AO356_11750 0.67 -0.5 2,661,918 - AO356_11750 0.67 -1.0 2,661,918 - AO356_11750 0.67 +0.7 2,661,918 - AO356_11750 0.67 -0.6 2,661,936 + AO356_11750 0.68 -0.5 2,661,936 + AO356_11750 0.68 +0.1 2,661,936 + AO356_11750 0.68 +0.4 2,661,936 + AO356_11750 0.68 -0.3 2,661,936 + AO356_11750 0.68 -0.3 2,661,937 - AO356_11750 0.68 +0.7 2,661,937 - AO356_11750 0.68 +0.3 2,661,937 - AO356_11750 0.68 +0.1 2,661,937 - AO356_11750 0.68 +0.4 2,661,937 - AO356_11750 0.68 -0.0 2,661,937 - AO356_11750 0.68 -0.0 2,661,937 - AO356_11750 0.68 +0.2 2,662,032 + AO356_11750 0.76 +0.3 2,662,032 + AO356_11750 0.76 -0.8 2,662,032 + AO356_11750 0.76 -0.0 2,662,032 + AO356_11750 0.76 -0.5 2,662,033 - AO356_11750 0.76 -0.6 2,662,033 - AO356_11750 0.76 -0.5 2,662,033 - AO356_11750 0.76 +0.3 2,662,050 + AO356_11750 0.77 -1.0 2,662,050 + AO356_11750 0.77 -0.1 2,662,050 + AO356_11750 0.77 +0.3 2,662,051 - AO356_11750 0.77 -0.6 2,662,088 + AO356_11750 0.80 +0.3 2,662,088 + AO356_11750 0.80 -0.1 2,662,088 + AO356_11750 0.80 -0.3 2,662,088 + AO356_11750 0.80 -1.1 2,662,088 + AO356_11750 0.80 -0.4 2,662,088 + AO356_11750 0.80 +0.4 2,662,089 - AO356_11750 0.81 +0.2 2,662,089 - AO356_11750 0.81 +1.2 2,662,089 - AO356_11750 0.81 +0.2 2,662,155 + AO356_11750 0.86 -0.1 2,662,155 + AO356_11750 0.86 +0.2 2,662,155 + AO356_11750 0.86 +0.5 2,662,155 + AO356_11750 0.86 +0.4 2,662,156 - AO356_11750 0.86 +1.0 2,662,156 - AO356_11750 0.86 +1.4 2,662,156 - AO356_11750 0.86 -0.4 2,662,156 - AO356_11750 0.86 -0.4 2,662,156 - AO356_11750 0.86 +0.7 2,662,271 + +1.1 2,662,338 + -0.0 2,662,339 - -0.8 2,662,339 - -0.3 2,662,339 - +0.1 2,662,339 - +0.4 2,662,339 - +0.7 2,662,339 - +0.1 2,662,339 - +0.0 2,663,014 - +1.1 2,663,036 - +0.1 2,663,061 - +0.0 2,663,066 - +0.3 2,663,074 + +0.6 2,663,075 - -0.9 2,663,075 - -0.5 2,663,075 - +1.0 2,663,075 - +0.1 2,663,075 - +1.3 2,663,079 + +0.9 2,663,221 + AO356_11760 0.34 +0.3 2,663,222 - AO356_11760 0.34 +0.3 2,663,320 + AO356_11760 0.51 -0.7 2,663,320 + AO356_11760 0.51 +0.5 2,663,320 + AO356_11760 0.51 +2.4 2,663,320 + AO356_11760 0.51 -0.3 2,663,320 + AO356_11760 0.51 +1.4 2,663,320 + AO356_11760 0.51 +0.4 2,663,320 + AO356_11760 0.51 -0.2 2,663,321 - AO356_11760 0.51 +0.3 2,663,321 - AO356_11760 0.51 +0.7 2,663,321 - AO356_11760 0.51 -0.0 2,663,321 - AO356_11760 0.51 +0.1 2,663,321 - AO356_11760 0.51 +0.2 2,663,321 - AO356_11760 0.51 +0.7 2,663,321 - AO356_11760 0.51 +0.7 2,663,321 - AO356_11760 0.51 +0.3 2,663,321 - AO356_11760 0.51 +1.2 2,663,321 - AO356_11760 0.51 +1.6 2,663,326 + AO356_11760 0.52 -0.2 2,663,326 + AO356_11760 0.52 +1.2 2,663,326 + AO356_11760 0.52 +0.2 2,663,326 + AO356_11760 0.52 +1.0 2,663,326 + AO356_11760 0.52 +0.2 2,663,326 + AO356_11760 0.52 +1.6 2,663,327 - AO356_11760 0.53 -0.1 2,663,327 - AO356_11760 0.53 +1.0 2,663,327 - AO356_11760 0.53 -0.7 2,663,327 - AO356_11760 0.53 +0.3 2,663,327 - AO356_11760 0.53 +0.8 2,663,327 - AO356_11760 0.53 +0.1 2,663,327 - AO356_11760 0.53 +0.2
Or see this region's nucleotide sequence