Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03045

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03040 and AO356_03045 are separated by 492 nucleotidesAO356_03045 and AO356_03050 are separated by 9 nucleotides AO356_03040: AO356_03040 - deoxyguanosinetriphosphate triphosphohydrolase, at 675,866 to 677,194 _03040 AO356_03045: AO356_03045 - LuxR family transcriptional regulator, at 677,687 to 678,313 _03045 AO356_03050: AO356_03050 - histidine kinase, at 678,323 to 681,943 _03050 Position (kb) 677 678 679Strain fitness (log2 ratio) -2 -1 0 1 2 3at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.858 kb on + strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.859 kb on - strand, within AO356_03040at 676.958 kb on + strand, within AO356_03040at 677.147 kb on + strandat 677.147 kb on + strandat 677.147 kb on + strandat 677.147 kb on + strandat 677.147 kb on + strandat 677.348 kb on - strandat 677.385 kb on - strandat 677.411 kb on - strandat 677.411 kb on - strandat 677.418 kb on + strandat 677.424 kb on + strandat 677.447 kb on - strandat 677.524 kb on + strandat 677.525 kb on - strandat 677.554 kb on - strandat 677.647 kb on - strandat 677.678 kb on - strandat 677.762 kb on + strand, within AO356_03045at 677.763 kb on - strand, within AO356_03045at 677.764 kb on + strand, within AO356_03045at 677.765 kb on - strand, within AO356_03045at 677.765 kb on - strand, within AO356_03045at 677.984 kb on + strand, within AO356_03045at 677.985 kb on - strand, within AO356_03045at 678.050 kb on - strand, within AO356_03045at 678.053 kb on + strand, within AO356_03045at 678.053 kb on + strand, within AO356_03045at 678.054 kb on - strand, within AO356_03045at 678.106 kb on - strand, within AO356_03045at 678.106 kb on - strand, within AO356_03045at 678.190 kb on - strand, within AO356_03045at 678.230 kb on + strand, within AO356_03045at 678.230 kb on + strand, within AO356_03045at 678.369 kb on + strandat 678.369 kb on + strandat 678.370 kb on - strandat 678.370 kb on - strandat 678.370 kb on - strandat 678.371 kb on + strandat 678.371 kb on + strandat 678.371 kb on + strandat 678.371 kb on + strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.372 kb on - strandat 678.414 kb on - strandat 678.414 kb on - strandat 678.584 kb on + strandat 678.585 kb on - strandat 678.585 kb on - strandat 678.836 kb on + strand, within AO356_03050at 678.836 kb on + strand, within AO356_03050at 678.836 kb on + strand, within AO356_03050at 678.836 kb on + strand, within AO356_03050at 678.836 kb on + strand, within AO356_03050at 678.836 kb on + strand, within AO356_03050at 678.836 kb on + strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.837 kb on - strand, within AO356_03050at 678.843 kb on - strand, within AO356_03050at 678.896 kb on + strand, within AO356_03050at 678.897 kb on - strand, within AO356_03050at 678.897 kb on - strand, within AO356_03050at 678.897 kb on - strand, within AO356_03050at 678.948 kb on + strand, within AO356_03050at 678.948 kb on + strand, within AO356_03050at 678.948 kb on + strand, within AO356_03050at 678.949 kb on - strand, within AO356_03050at 678.977 kb on + strand, within AO356_03050at 678.977 kb on + strand, within AO356_03050at 678.977 kb on + strand, within AO356_03050at 678.977 kb on + strand, within AO356_03050at 678.977 kb on + strand, within AO356_03050at 678.977 kb on + strand, within AO356_03050at 678.978 kb on - strand, within AO356_03050at 678.978 kb on - strand, within AO356_03050at 678.978 kb on - strand, within AO356_03050at 678.995 kb on + strand, within AO356_03050at 678.996 kb on - strand, within AO356_03050at 678.996 kb on - strand, within AO356_03050at 678.996 kb on - strand, within AO356_03050at 679.040 kb on + strand, within AO356_03050at 679.040 kb on + strand, within AO356_03050at 679.040 kb on + strand, within AO356_03050at 679.040 kb on + strand, within AO356_03050at 679.040 kb on + strand, within AO356_03050at 679.041 kb on - strand, within AO356_03050at 679.041 kb on - strand, within AO356_03050at 679.041 kb on - strand, within AO356_03050at 679.041 kb on - strand, within AO356_03050at 679.169 kb on + strand, within AO356_03050at 679.169 kb on + strand, within AO356_03050at 679.170 kb on - strand, within AO356_03050at 679.170 kb on - strand, within AO356_03050at 679.188 kb on + strand, within AO356_03050

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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676,858 + AO356_03040 0.75 +0.1
676,858 + AO356_03040 0.75 +0.0
676,858 + AO356_03040 0.75 +0.5
676,858 + AO356_03040 0.75 +0.4
676,858 + AO356_03040 0.75 +1.7
676,858 + AO356_03040 0.75 +0.5
676,858 + AO356_03040 0.75 -0.5
676,859 - AO356_03040 0.75 +1.5
676,859 - AO356_03040 0.75 +0.3
676,859 - AO356_03040 0.75 +0.6
676,859 - AO356_03040 0.75 +0.1
676,859 - AO356_03040 0.75 +0.0
676,859 - AO356_03040 0.75 +0.3
676,859 - AO356_03040 0.75 +0.5
676,859 - AO356_03040 0.75 +0.4
676,859 - AO356_03040 0.75 +1.7
676,859 - AO356_03040 0.75 -0.1
676,859 - AO356_03040 0.75 +0.3
676,859 - AO356_03040 0.75 -0.1
676,859 - AO356_03040 0.75 -1.3
676,859 - AO356_03040 0.75 +1.1
676,859 - AO356_03040 0.75 +0.1
676,859 - AO356_03040 0.75 +1.5
676,859 - AO356_03040 0.75 +1.1
676,859 - AO356_03040 0.75 -0.3
676,958 + AO356_03040 0.82 -0.4
677,147 + -0.2
677,147 + +0.5
677,147 + +1.1
677,147 + +1.1
677,147 + +1.3
677,348 - -0.2
677,385 - +0.3
677,411 - +0.1
677,411 - +0.0
677,418 + +2.0
677,424 + +0.7
677,447 - -0.6
677,524 + -0.5
677,525 - +0.8
677,554 - -0.5
677,647 - +0.4
677,678 - -1.4
677,762 + AO356_03045 0.12 +2.8
677,763 - AO356_03045 0.12 -0.2
677,764 + AO356_03045 0.12 +1.3
677,765 - AO356_03045 0.12 +0.0
677,765 - AO356_03045 0.12 -0.6
677,984 + AO356_03045 0.47 -0.3
677,985 - AO356_03045 0.48 +1.9
678,050 - AO356_03045 0.58 +0.8
678,053 + AO356_03045 0.58 +0.8
678,053 + AO356_03045 0.58 +0.1
678,054 - AO356_03045 0.59 -0.1
678,106 - AO356_03045 0.67 +0.3
678,106 - AO356_03045 0.67 +0.2
678,190 - AO356_03045 0.80 +1.3
678,230 + AO356_03045 0.87 +0.1
678,230 + AO356_03045 0.87 +0.1
678,369 + +0.3
678,369 + +0.5
678,370 - -2.7
678,370 - +0.7
678,370 - +0.1
678,371 + +0.9
678,371 + -1.5
678,371 + +0.2
678,371 + -0.2
678,372 - -0.3
678,372 - -0.5
678,372 - +1.8
678,372 - +0.2
678,372 - -0.4
678,372 - +0.4
678,372 - +0.4
678,372 - +0.1
678,414 - +0.2
678,414 - +0.2
678,584 + +0.6
678,585 - -0.2
678,585 - +0.6
678,836 + AO356_03050 0.14 +0.8
678,836 + AO356_03050 0.14 +0.7
678,836 + AO356_03050 0.14 +0.9
678,836 + AO356_03050 0.14 +0.6
678,836 + AO356_03050 0.14 +0.5
678,836 + AO356_03050 0.14 +0.7
678,836 + AO356_03050 0.14 +0.2
678,837 - AO356_03050 0.14 -0.3
678,837 - AO356_03050 0.14 -1.2
678,837 - AO356_03050 0.14 -1.0
678,837 - AO356_03050 0.14 -0.1
678,837 - AO356_03050 0.14 -1.5
678,837 - AO356_03050 0.14 -0.2
678,837 - AO356_03050 0.14 -0.3
678,843 - AO356_03050 0.14 -2.2
678,896 + AO356_03050 0.16 +0.2
678,897 - AO356_03050 0.16 -0.6
678,897 - AO356_03050 0.16 +0.3
678,897 - AO356_03050 0.16 -0.4
678,948 + AO356_03050 0.17 +0.5
678,948 + AO356_03050 0.17 +0.5
678,948 + AO356_03050 0.17 +0.2
678,949 - AO356_03050 0.17 +0.3
678,977 + AO356_03050 0.18 +1.1
678,977 + AO356_03050 0.18 -0.1
678,977 + AO356_03050 0.18 +0.4
678,977 + AO356_03050 0.18 +0.5
678,977 + AO356_03050 0.18 -0.3
678,977 + AO356_03050 0.18 +0.4
678,978 - AO356_03050 0.18 -0.9
678,978 - AO356_03050 0.18 +0.5
678,978 - AO356_03050 0.18 -0.4
678,995 + AO356_03050 0.19 -0.5
678,996 - AO356_03050 0.19 -0.3
678,996 - AO356_03050 0.19 -0.3
678,996 - AO356_03050 0.19 +0.3
679,040 + AO356_03050 0.20 -0.6
679,040 + AO356_03050 0.20 -0.1
679,040 + AO356_03050 0.20 +0.4
679,040 + AO356_03050 0.20 +0.2
679,040 + AO356_03050 0.20 -0.5
679,041 - AO356_03050 0.20 +0.2
679,041 - AO356_03050 0.20 +0.0
679,041 - AO356_03050 0.20 +1.3
679,041 - AO356_03050 0.20 +0.7
679,169 + AO356_03050 0.23 +0.0
679,169 + AO356_03050 0.23 +1.1
679,170 - AO356_03050 0.23 -0.1
679,170 - AO356_03050 0.23 -0.4
679,188 + AO356_03050 0.24 -0.8

Or see this region's nucleotide sequence