Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004167 and ABIE53_004168 are separated by 390 nucleotides ABIE53_004168 and ABIE53_004169 are separated by 172 nucleotides
ABIE53_004167: ABIE53_004167 - POT family proton-dependent oligopeptide transporter, at 340,224 to 341,765
_004167
ABIE53_004168: ABIE53_004168 - transcriptional regulator with XRE-family HTH domain, at 342,156 to 342,728
_004168
ABIE53_004169: ABIE53_004169 - oligopeptide transport system substrate-binding protein, at 342,901 to 344,529
_004169
Position (kb) 342
343 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 341.195 kb on - strand, within ABIE53_004167 at 341.195 kb on - strand, within ABIE53_004167 at 341.304 kb on - strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.317 kb on + strand, within ABIE53_004167 at 341.318 kb on - strand, within ABIE53_004167 at 341.318 kb on - strand, within ABIE53_004167 at 341.318 kb on - strand, within ABIE53_004167 at 341.320 kb on + strand, within ABIE53_004167 at 341.320 kb on + strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.321 kb on - strand, within ABIE53_004167 at 341.362 kb on + strand, within ABIE53_004167 at 341.362 kb on + strand, within ABIE53_004167 at 341.362 kb on + strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.363 kb on - strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.437 kb on + strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.438 kb on - strand, within ABIE53_004167 at 341.572 kb on + strand, within ABIE53_004167 at 341.671 kb on + strand at 341.770 kb on + strand at 341.771 kb on - strand at 341.771 kb on - strand at 341.787 kb on - strand at 341.912 kb on - strand at 341.942 kb on - strand at 342.014 kb on + strand at 342.015 kb on - strand at 342.015 kb on - strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.029 kb on + strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.030 kb on - strand at 342.155 kb on + strand at 342.156 kb on - strand at 342.173 kb on + strand at 342.197 kb on - strand at 342.197 kb on - strand at 342.366 kb on + strand, within ABIE53_004168 at 342.366 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.563 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.567 kb on + strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.568 kb on - strand, within ABIE53_004168 at 342.643 kb on - strand, within ABIE53_004168 at 342.663 kb on - strand, within ABIE53_004168 at 342.841 kb on + strand at 343.310 kb on - strand, within ABIE53_004169 at 343.310 kb on - strand, within ABIE53_004169 at 343.402 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.549 kb on + strand, within ABIE53_004169 at 343.550 kb on - strand, within ABIE53_004169 at 343.646 kb on - strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.684 kb on + strand, within ABIE53_004169 at 343.685 kb on - strand, within ABIE53_004169 at 343.711 kb on + strand, within ABIE53_004169 at 343.712 kb on - strand, within ABIE53_004169
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 341,195 - ABIE53_004167 0.63 -1.0 341,195 - ABIE53_004167 0.63 +0.0 341,304 - ABIE53_004167 0.70 -1.7 341,317 + ABIE53_004167 0.71 -1.5 341,317 + ABIE53_004167 0.71 -0.6 341,317 + ABIE53_004167 0.71 +0.3 341,317 + ABIE53_004167 0.71 +0.2 341,317 + ABIE53_004167 0.71 +0.0 341,318 - ABIE53_004167 0.71 +0.0 341,318 - ABIE53_004167 0.71 -0.5 341,318 - ABIE53_004167 0.71 +0.3 341,320 + ABIE53_004167 0.71 +0.5 341,320 + ABIE53_004167 0.71 -1.5 341,321 - ABIE53_004167 0.71 -0.1 341,321 - ABIE53_004167 0.71 +0.0 341,321 - ABIE53_004167 0.71 -0.2 341,321 - ABIE53_004167 0.71 -1.6 341,362 + ABIE53_004167 0.74 -0.2 341,362 + ABIE53_004167 0.74 +1.6 341,362 + ABIE53_004167 0.74 -0.3 341,363 - ABIE53_004167 0.74 -1.2 341,363 - ABIE53_004167 0.74 +0.0 341,363 - ABIE53_004167 0.74 +1.6 341,363 - ABIE53_004167 0.74 -0.2 341,363 - ABIE53_004167 0.74 +0.6 341,363 - ABIE53_004167 0.74 +0.4 341,363 - ABIE53_004167 0.74 -0.4 341,437 + ABIE53_004167 0.79 +0.2 341,437 + ABIE53_004167 0.79 -0.0 341,437 + ABIE53_004167 0.79 -0.9 341,437 + ABIE53_004167 0.79 -1.2 341,438 - ABIE53_004167 0.79 -0.4 341,438 - ABIE53_004167 0.79 +0.2 341,438 - ABIE53_004167 0.79 -0.4 341,438 - ABIE53_004167 0.79 +0.3 341,438 - ABIE53_004167 0.79 -2.3 341,572 + ABIE53_004167 0.87 +0.7 341,671 + +0.0 341,770 + +0.6 341,771 - -1.3 341,771 - -1.2 341,787 - -2.7 341,912 - -2.1 341,942 - -1.4 342,014 + -1.4 342,015 - -1.6 342,015 - -1.0 342,029 + -0.7 342,029 + +1.0 342,029 + +0.5 342,030 - +0.0 342,030 - +0.3 342,030 - -0.3 342,030 - -1.7 342,030 - -2.7 342,155 + +0.6 342,156 - -0.0 342,173 + -2.0 342,197 - -0.1 342,197 - -3.9 342,366 + ABIE53_004168 0.37 +2.2 342,366 + ABIE53_004168 0.37 -0.7 342,563 + ABIE53_004168 0.71 -2.2 342,563 + ABIE53_004168 0.71 -3.4 342,567 + ABIE53_004168 0.72 -1.2 342,567 + ABIE53_004168 0.72 -2.8 342,567 + ABIE53_004168 0.72 -1.7 342,567 + ABIE53_004168 0.72 -2.9 342,568 - ABIE53_004168 0.72 -2.8 342,568 - ABIE53_004168 0.72 -1.1 342,643 - ABIE53_004168 0.85 -1.7 342,663 - ABIE53_004168 0.88 -1.6 342,841 + -2.4 343,310 - ABIE53_004169 0.25 -0.0 343,310 - ABIE53_004169 0.25 +0.3 343,402 + ABIE53_004169 0.31 +0.6 343,549 + ABIE53_004169 0.40 -1.4 343,549 + ABIE53_004169 0.40 +0.5 343,549 + ABIE53_004169 0.40 +1.6 343,549 + ABIE53_004169 0.40 -1.2 343,549 + ABIE53_004169 0.40 -0.8 343,549 + ABIE53_004169 0.40 +2.6 343,550 - ABIE53_004169 0.40 +1.6 343,646 - ABIE53_004169 0.46 -1.8 343,684 + ABIE53_004169 0.48 +1.9 343,684 + ABIE53_004169 0.48 -0.4 343,684 + ABIE53_004169 0.48 -0.4 343,685 - ABIE53_004169 0.48 -1.6 343,711 + ABIE53_004169 0.50 -0.7 343,712 - ABIE53_004169 0.50 +0.1
Or see this region's nucleotide sequence