Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_003434

Experiment: 4-Hydroxybenzoic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxybenzoic Acid (C)
3,860,910	+		ABIE53_003432	0.38	+1.6
3,860,910	+		ABIE53_003432	0.38	-0.6
3,860,910	+		ABIE53_003432	0.38	-1.4
3,860,910	+		ABIE53_003432	0.38	-2.0
3,860,910	+		ABIE53_003432	0.38	+1.5
3,860,910	+		ABIE53_003432	0.38	+0.4
3,860,910	+		ABIE53_003432	0.38	-0.2
3,860,910	+		ABIE53_003432	0.38	-2.9
3,860,910	+		ABIE53_003432	0.38	-2.4
3,860,910	+		ABIE53_003432	0.38	-0.3
3,860,910	+		ABIE53_003432	0.38	+1.6
3,860,911	-		ABIE53_003432	0.38	-0.2
3,860,911	-		ABIE53_003432	0.38	-0.6
3,860,911	-		ABIE53_003432	0.38	+1.6
3,860,911	-		ABIE53_003432	0.38	+0.9
3,860,911	-		ABIE53_003432	0.38	+2.6
3,860,950	+		ABIE53_003432	0.42	-2.2
3,860,950	+		ABIE53_003432	0.42	+0.4
3,860,950	+		ABIE53_003432	0.42	-1.2
3,860,950	+		ABIE53_003432	0.42	-0.5
3,860,950	+		ABIE53_003432	0.42	-0.4
3,860,950	+		ABIE53_003432	0.42	-2.6
3,860,951	-		ABIE53_003432	0.42	-1.6
3,860,951	-		ABIE53_003432	0.42	-0.9
3,860,951	-		ABIE53_003432	0.42	-1.0
3,861,055	+		ABIE53_003432	0.54	-0.6
3,861,055	+		ABIE53_003432	0.54	-0.4
3,861,055	+		ABIE53_003432	0.54	+1.3
3,861,056	-		ABIE53_003432	0.54	+1.0
3,861,056	-		ABIE53_003432	0.54	-1.0
3,861,056	-		ABIE53_003432	0.54	-1.3
3,861,056	-		ABIE53_003432	0.54	-0.4
3,861,056	-		ABIE53_003432	0.54	-0.6
3,861,056	-		ABIE53_003432	0.54	-0.1
3,861,056	-		ABIE53_003432	0.54	-2.4
3,861,133	+		ABIE53_003432	0.62	-1.3
3,861,133	+		ABIE53_003432	0.62	+0.3
3,861,133	+		ABIE53_003432	0.62	-0.4
3,861,134	-		ABIE53_003432	0.62	-1.0
3,861,134	-		ABIE53_003432	0.62	-0.7
3,861,134	-		ABIE53_003432	0.62	-1.5
3,861,187	+		ABIE53_003432	0.68	-0.6
3,861,187	+		ABIE53_003432	0.68	+0.9
3,861,187	+		ABIE53_003432	0.68	-0.2
3,861,187	+		ABIE53_003432	0.68	-0.8
3,861,187	+		ABIE53_003432	0.68	+1.6
3,861,187	+		ABIE53_003432	0.68	+0.6
3,861,187	+		ABIE53_003432	0.68	-0.4
3,861,187	+		ABIE53_003432	0.68	-1.6
3,861,188	-		ABIE53_003432	0.68	-0.7
3,861,188	-		ABIE53_003432	0.68	+1.1
3,861,188	-		ABIE53_003432	0.68	-0.7
3,861,188	-		ABIE53_003432	0.68	-0.7
3,861,188	-		ABIE53_003432	0.68	-1.6
3,861,301	+		ABIE53_003432	0.80	-1.0
3,861,301	+		ABIE53_003432	0.80	-2.3
3,861,302	-		ABIE53_003432	0.80	-1.4
3,861,302	-		ABIE53_003432	0.80	-1.9
3,861,302	-		ABIE53_003432	0.80	-0.6
3,861,302	-		ABIE53_003432	0.80	-0.4
3,861,366	+		ABIE53_003432	0.87	-2.3
3,861,457	+				-2.2
3,861,457	+				+0.8
3,861,457	+				+0.2
3,861,457	+				-1.2
3,861,457	+				+2.6
3,861,457	+				-0.1
3,861,457	+				-0.7
3,861,457	+				-0.6
3,861,457	+				+0.0
3,861,457	+				-1.7
3,861,457	+				-1.6
3,861,457	+				+0.6
3,861,458	-				-0.3
3,861,458	-				-0.4
3,861,458	-				+1.0
3,861,458	-				-0.6
3,861,458	-				-0.5
3,861,458	-				-2.0
3,861,458	-				-0.3
3,861,458	-				-1.0
3,861,481	+				+0.7
3,861,481	+				-0.8
3,861,481	+				+0.4
3,861,482	-				-0.7
3,861,482	-				-2.2
3,861,511	+				-0.8
3,861,511	+				+0.8
3,861,511	+				+0.6
3,861,511	+				+0.7
3,861,511	+				-3.0
3,861,511	+				-1.0
3,861,511	+				+0.0
3,861,511	+				+1.6
3,861,511	+				-2.3
3,861,511	+				-1.2
3,861,511	+				+1.4
3,861,511	+				-2.1
3,861,511	+				-1.3
3,861,511	+				-0.5
3,861,511	+				+0.1
3,861,511	+				+0.6
3,861,511	+				+0.0
3,861,511	+				-1.2
3,861,511	+				+0.4
3,861,511	+				+1.7
3,861,511	+				-0.3
3,861,511	+				+0.1
3,861,511	+				+0.1
3,861,511	+				+1.0
3,861,511	+				-2.1
3,861,511	+				-1.2
3,861,512	-				-1.3
3,861,512	-				-1.7
3,861,512	-				-3.2
3,861,512	-				+0.0
3,861,512	-				-1.9
3,861,512	-				-1.3
3,861,512	-				+0.1
3,861,512	-				+1.2
3,861,512	-				+0.1
3,861,512	-				+0.5
3,861,512	-				+0.3
3,861,512	-				-1.1
3,861,512	-				-2.1
3,861,512	-				-1.7
3,861,512	-				-3.4
3,861,512	-				-2.7
3,861,512	-				+0.6
3,861,512	-				+0.0
3,861,512	-				+3.9
3,861,512	-				-0.9
3,861,512	-				-1.2
3,861,512	-				+0.4
3,861,536	+				-0.7
3,861,536	+				+1.6
3,861,585	+		ABIE53_003433	0.29	-0.3
3,861,585	+		ABIE53_003433	0.29	-1.6
3,861,635	+		ABIE53_003433	0.55	-1.8
3,861,636	-		ABIE53_003433	0.55	+0.6
3,861,636	-		ABIE53_003433	0.55	-2.9
3,861,669	+		ABIE53_003433	0.72	+0.2
3,861,669	+		ABIE53_003433	0.72	-1.4
3,861,669	+		ABIE53_003433	0.72	-1.6
3,861,670	-		ABIE53_003433	0.73	-1.3
3,861,670	-		ABIE53_003433	0.73	-1.6
3,861,670	-		ABIE53_003433	0.73	-1.1
3,861,670	-		ABIE53_003433	0.73	-3.0
3,861,670	-		ABIE53_003433	0.73	-1.4
3,861,684	+		ABIE53_003433	0.80	-2.0
3,861,684	+		ABIE53_003433	0.80	+2.5
3,861,684	+		ABIE53_003433	0.80	-0.8
3,861,684	+		ABIE53_003433	0.80	-2.4
3,861,685	-		ABIE53_003433	0.81	-2.4
3,861,685	-		ABIE53_003433	0.81	-2.1
3,861,685	-		ABIE53_003433	0.81	-1.0
3,861,685	-		ABIE53_003433	0.81	-3.6
3,861,819	+				+0.6
3,861,820	-				-2.1
3,861,820	-				-1.9
3,861,820	-				-0.1
3,861,820	-				-1.4
3,861,820	-				-0.1
3,861,829	+				-0.9
3,861,830	-				+0.3
3,862,056	-		ABIE53_003434	0.16	-1.9
3,862,145	+		ABIE53_003434	0.25	-3.4
3,862,145	+		ABIE53_003434	0.25	-1.2
3,862,145	+		ABIE53_003434	0.25	-3.2
3,862,145	+		ABIE53_003434	0.25	-2.2
3,862,145	+		ABIE53_003434	0.25	-4.8
3,862,145	+		ABIE53_003434	0.25	-0.4
3,862,145	+		ABIE53_003434	0.25	-4.6
3,862,145	+		ABIE53_003434	0.25	-3.7
3,862,146	-		ABIE53_003434	0.25	-5.3
3,862,146	-		ABIE53_003434	0.25	-2.6
3,862,146	-		ABIE53_003434	0.25	-1.5
3,862,146	-		ABIE53_003434	0.25	-1.9
3,862,146	-		ABIE53_003434	0.25	-4.7
3,862,214	+		ABIE53_003434	0.32	-0.4
3,862,217	-		ABIE53_003434	0.32	+0.0
3,862,298	+		ABIE53_003434	0.40	-3.0
3,862,299	-		ABIE53_003434	0.40	-2.5
3,862,299	-		ABIE53_003434	0.40	-0.7
3,862,451	+		ABIE53_003434	0.55	-1.9
3,862,452	-		ABIE53_003434	0.55	+0.0
3,862,524	-		ABIE53_003434	0.62	-3.8
3,862,730	+		ABIE53_003434	0.82	-3.0
3,862,730	+		ABIE53_003434	0.82	-1.9
3,862,731	-		ABIE53_003434	0.82	-2.6
3,862,782	+		ABIE53_003434	0.87	-2.9
3,862,782	+		ABIE53_003434	0.87	-2.1
3,862,782	+		ABIE53_003434	0.87	-2.3
3,862,783	-		ABIE53_003434	0.87	-3.2
3,862,783	-		ABIE53_003434	0.87	-2.0
3,862,783	-		ABIE53_003434	0.87	-1.0
3,862,783	-		ABIE53_003434	0.87	-2.2
3,863,101	+				-0.0
3,863,102	-				+0.5
3,863,102	-				-2.9
3,863,135	+		ABIE53_003435	0.11	+0.3
3,863,135	+		ABIE53_003435	0.11	-0.7
3,863,135	+		ABIE53_003435	0.11	-0.7
3,863,136	-		ABIE53_003435	0.12	-0.7
3,863,136	-		ABIE53_003435	0.12	+1.0
3,863,136	-		ABIE53_003435	0.12	-0.0
3,863,136	-		ABIE53_003435	0.12	+0.0
3,863,136	-		ABIE53_003435	0.12	-0.1
3,863,136	-		ABIE53_003435	0.12	-1.0
3,863,136	-		ABIE53_003435	0.12	-2.3
3,863,138	+		ABIE53_003435	0.12	+0.4
3,863,138	+		ABIE53_003435	0.12	-0.2
3,863,138	+		ABIE53_003435	0.12	+1.5
3,863,138	+		ABIE53_003435	0.12	+0.0
3,863,138	+		ABIE53_003435	0.12	+1.6
3,863,138	+		ABIE53_003435	0.12	+1.6
3,863,138	+		ABIE53_003435	0.12	+0.7
3,863,138	+		ABIE53_003435	0.12	+3.6
3,863,138	+		ABIE53_003435	0.12	+0.2
3,863,139	-		ABIE53_003435	0.12	-2.2
3,863,139	-		ABIE53_003435	0.12	-1.2
3,863,139	-		ABIE53_003435	0.12	+0.0
3,863,139	-		ABIE53_003435	0.12	-0.7
3,863,139	-		ABIE53_003435	0.12	-2.0
3,863,318	+		ABIE53_003435	0.52	+2.6
3,863,319	-		ABIE53_003435	0.53	-0.2
3,863,319	-		ABIE53_003435	0.53	-0.9
3,863,342	+		ABIE53_003435	0.58	+1.1
3,863,342	+		ABIE53_003435	0.58	-0.3
3,863,342	+		ABIE53_003435	0.58	-0.6
3,863,343	-		ABIE53_003435	0.58	-0.9
3,863,408	+		ABIE53_003435	0.72	-0.2
3,863,408	+		ABIE53_003435	0.72	+2.3
3,863,408	+		ABIE53_003435	0.72	-0.5
3,863,408	+		ABIE53_003435	0.72	+0.6
3,863,408	+		ABIE53_003435	0.72	-2.5
3,863,408	+		ABIE53_003435	0.72	-1.2
3,863,408	+		ABIE53_003435	0.72	-1.6
3,863,408	+		ABIE53_003435	0.72	+0.4
3,863,408	+		ABIE53_003435	0.72	+1.6
3,863,408	+		ABIE53_003435	0.72	-0.7
3,863,408	+		ABIE53_003435	0.72	-0.2
3,863,408	+		ABIE53_003435	0.72	-1.6
3,863,408	+		ABIE53_003435	0.72	+0.2
3,863,408	+		ABIE53_003435	0.72	+0.1
3,863,408	+		ABIE53_003435	0.72	-0.3
3,863,408	+		ABIE53_003435	0.72	-1.6
3,863,408	+		ABIE53_003435	0.72	+0.3
3,863,409	-		ABIE53_003435	0.73	+0.2
3,863,409	-		ABIE53_003435	0.73	-1.0
3,863,409	-		ABIE53_003435	0.73	+0.6
3,863,409	-		ABIE53_003435	0.73	-0.3
3,863,409	-		ABIE53_003435	0.73	-0.5
3,863,409	-		ABIE53_003435	0.73	-0.9
3,863,409	-		ABIE53_003435	0.73	-0.7
3,863,409	-		ABIE53_003435	0.73	-0.2
3,863,409	-		ABIE53_003435	0.73	+0.1
3,863,409	-		ABIE53_003435	0.73	-1.6
3,863,409	-		ABIE53_003435	0.73	-0.1
3,863,409	-		ABIE53_003435	0.73	+0.0
3,863,409	-		ABIE53_003435	0.73	-1.0
3,863,409	-		ABIE53_003435	0.73	-1.1
3,863,409	-		ABIE53_003435	0.73	-0.7
3,863,409	-		ABIE53_003435	0.73	-1.9
3,863,409	-		ABIE53_003435	0.73	-0.7
3,863,703	+		ABIE53_003436	0.12	-1.0
3,863,703	+		ABIE53_003436	0.12	-1.0
3,863,703	+		ABIE53_003436	0.12	-1.4
3,863,704	-		ABIE53_003436	0.12	-0.7
3,863,704	-		ABIE53_003436	0.12	-0.7
3,863,888	+		ABIE53_003436	0.28	-0.2
3,863,888	+		ABIE53_003436	0.28	-0.1
3,863,889	-		ABIE53_003436	0.28	+1.1
3,863,889	-		ABIE53_003436	0.28	-2.2