Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000636 and ABIE53_000637 overlap by 4 nucleotides ABIE53_000637 and ABIE53_000638 are separated by 40 nucleotides
ABIE53_000636: ABIE53_000636 - taurine transport system ATP-binding protein, at 692,202 to 692,999
_000636
ABIE53_000637: ABIE53_000637 - taurine transport system permease protein, at 692,996 to 693,865
_000637
ABIE53_000638: ABIE53_000638 - HAD superfamily hydrolase (TIGR01490 family), at 693,906 to 694,514
_000638
Position (kb) 693
694
695 Strain fitness (log2 ratio) -2
-1
0
1
2 at 693.404 kb on + strand, within ABIE53_000637 at 693.404 kb on + strand, within ABIE53_000637 at 693.404 kb on + strand, within ABIE53_000637 at 693.405 kb on - strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.428 kb on + strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.429 kb on - strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.488 kb on + strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.489 kb on - strand, within ABIE53_000637 at 693.570 kb on - strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.612 kb on + strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.613 kb on - strand, within ABIE53_000637 at 693.863 kb on + strand at 693.863 kb on + strand at 693.863 kb on + strand at 693.863 kb on + strand at 693.863 kb on + strand at 693.864 kb on - strand at 693.864 kb on - strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.876 kb on + strand at 693.877 kb on - strand at 693.877 kb on - strand at 693.877 kb on - strand at 694.031 kb on + strand, within ABIE53_000638 at 694.032 kb on - strand, within ABIE53_000638 at 694.032 kb on - strand, within ABIE53_000638 at 694.033 kb on + strand, within ABIE53_000638 at 694.033 kb on + strand, within ABIE53_000638 at 694.033 kb on + strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.034 kb on - strand, within ABIE53_000638 at 694.414 kb on + strand, within ABIE53_000638 at 694.415 kb on - strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.444 kb on + strand, within ABIE53_000638 at 694.445 kb on - strand, within ABIE53_000638 at 694.445 kb on - strand, within ABIE53_000638 at 694.445 kb on - strand, within ABIE53_000638 at 694.453 kb on + strand, within ABIE53_000638 at 694.456 kb on + strand at 694.456 kb on + strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.457 kb on - strand at 694.494 kb on + strand at 694.494 kb on + strand at 694.494 kb on + strand at 694.494 kb on + strand at 694.555 kb on - strand at 694.555 kb on - strand at 694.632 kb on + strand at 694.641 kb on + strand at 694.641 kb on + strand at 694.641 kb on + strand at 694.641 kb on + strand at 694.642 kb on - strand at 694.642 kb on - strand at 694.642 kb on - strand at 694.642 kb on - strand at 694.705 kb on - strand at 694.705 kb on - strand at 694.708 kb on + strand at 694.708 kb on + strand at 694.723 kb on - strand at 694.727 kb on + strand at 694.727 kb on + strand at 694.749 kb on - strand at 694.749 kb on - strand at 694.749 kb on - strand at 694.757 kb on - strand at 694.757 kb on - strand at 694.757 kb on - strand at 694.757 kb on - strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.824 kb on + strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.825 kb on - strand at 694.881 kb on + strand at 694.882 kb on - strand at 694.997 kb on + strand at 694.998 kb on - strand at 694.998 kb on - strand at 694.998 kb on - strand at 695.221 kb on - strand at 695.380 kb on + strand at 695.380 kb on + strand at 695.381 kb on - strand at 695.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 693,404 + ABIE53_000637 0.47 -1.0 693,404 + ABIE53_000637 0.47 +2.7 693,404 + ABIE53_000637 0.47 +0.9 693,405 - ABIE53_000637 0.47 +0.2 693,428 + ABIE53_000637 0.50 -0.7 693,428 + ABIE53_000637 0.50 -0.2 693,428 + ABIE53_000637 0.50 -1.0 693,428 + ABIE53_000637 0.50 +0.0 693,428 + ABIE53_000637 0.50 -1.4 693,429 - ABIE53_000637 0.50 -1.8 693,429 - ABIE53_000637 0.50 +1.4 693,429 - ABIE53_000637 0.50 +0.0 693,429 - ABIE53_000637 0.50 +0.3 693,488 + ABIE53_000637 0.57 +0.6 693,488 + ABIE53_000637 0.57 -1.1 693,488 + ABIE53_000637 0.57 -0.7 693,488 + ABIE53_000637 0.57 -1.1 693,488 + ABIE53_000637 0.57 -2.0 693,489 - ABIE53_000637 0.57 -1.3 693,489 - ABIE53_000637 0.57 -0.0 693,489 - ABIE53_000637 0.57 -0.1 693,489 - ABIE53_000637 0.57 -0.4 693,489 - ABIE53_000637 0.57 -0.8 693,489 - ABIE53_000637 0.57 -1.0 693,489 - ABIE53_000637 0.57 -1.0 693,489 - ABIE53_000637 0.57 +0.6 693,570 - ABIE53_000637 0.66 +0.9 693,612 + ABIE53_000637 0.71 +2.5 693,612 + ABIE53_000637 0.71 -0.1 693,612 + ABIE53_000637 0.71 -1.4 693,612 + ABIE53_000637 0.71 -0.3 693,612 + ABIE53_000637 0.71 +2.0 693,612 + ABIE53_000637 0.71 +1.0 693,612 + ABIE53_000637 0.71 -0.2 693,612 + ABIE53_000637 0.71 -1.0 693,612 + ABIE53_000637 0.71 -1.0 693,613 - ABIE53_000637 0.71 -0.8 693,613 - ABIE53_000637 0.71 +0.6 693,613 - ABIE53_000637 0.71 -0.6 693,613 - ABIE53_000637 0.71 +1.4 693,613 - ABIE53_000637 0.71 +0.6 693,613 - ABIE53_000637 0.71 -0.4 693,613 - ABIE53_000637 0.71 +0.8 693,863 + +0.0 693,863 + -0.7 693,863 + +0.0 693,863 + +0.7 693,863 + -1.6 693,864 - -0.2 693,864 - +0.0 693,876 + -0.6 693,876 + -1.0 693,876 + -0.4 693,876 + -0.2 693,876 + +0.6 693,876 + -0.7 693,877 - -1.0 693,877 - -0.5 693,877 - -1.6 694,031 + ABIE53_000638 0.21 -0.4 694,032 - ABIE53_000638 0.21 -0.4 694,032 - ABIE53_000638 0.21 +0.3 694,033 + ABIE53_000638 0.21 -1.0 694,033 + ABIE53_000638 0.21 +0.0 694,033 + ABIE53_000638 0.21 -1.4 694,034 - ABIE53_000638 0.21 +0.6 694,034 - ABIE53_000638 0.21 +0.0 694,034 - ABIE53_000638 0.21 -1.8 694,034 - ABIE53_000638 0.21 -1.7 694,414 + ABIE53_000638 0.83 +1.2 694,415 - ABIE53_000638 0.84 +1.6 694,444 + ABIE53_000638 0.88 -0.7 694,444 + ABIE53_000638 0.88 -2.0 694,444 + ABIE53_000638 0.88 -1.0 694,444 + ABIE53_000638 0.88 -1.3 694,444 + ABIE53_000638 0.88 -0.1 694,445 - ABIE53_000638 0.89 +0.1 694,445 - ABIE53_000638 0.89 -1.2 694,445 - ABIE53_000638 0.89 +1.9 694,453 + ABIE53_000638 0.90 -1.9 694,456 + -2.4 694,456 + -1.1 694,457 - -0.7 694,457 - -2.0 694,457 - -1.0 694,457 - -2.2 694,457 - -0.1 694,457 - -1.7 694,494 + -1.2 694,494 + -1.3 694,494 + -1.6 694,494 + -1.2 694,555 - -1.8 694,555 - -1.1 694,632 + -1.4 694,641 + +0.4 694,641 + -2.2 694,641 + -0.7 694,641 + -1.7 694,642 - +0.4 694,642 - -0.4 694,642 - -1.7 694,642 - -1.8 694,705 - -0.3 694,705 - +0.6 694,708 + -2.0 694,708 + +0.6 694,723 - +2.0 694,727 + -1.8 694,727 + -1.4 694,749 - +1.7 694,749 - +0.1 694,749 - +0.0 694,757 - +0.2 694,757 - +1.0 694,757 - -0.5 694,757 - -0.4 694,824 + -0.4 694,824 + -1.8 694,824 + -2.6 694,824 + -0.4 694,824 + -1.0 694,824 + -1.8 694,825 - +0.6 694,825 - +1.3 694,825 - -0.7 694,825 - -0.4 694,825 - -0.2 694,825 - +0.2 694,881 + +1.6 694,882 - +0.0 694,997 + +0.1 694,998 - +1.6 694,998 - +0.0 694,998 - +0.4 695,221 - -0.9 695,380 + -0.2 695,380 + +0.4 695,381 - -0.6 695,381 - +0.6
Or see this region's nucleotide sequence