Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000231 and ABIE53_000232 are separated by 109 nucleotides ABIE53_000232 and ABIE53_000233 are separated by 158 nucleotides ABIE53_000233 and ABIE53_000234 are separated by 418 nucleotides
ABIE53_000231: ABIE53_000231 - cytochrome c5, at 237,625 to 238,542
_000231
ABIE53_000232: ABIE53_000232 - hypothetical protein, at 238,652 to 239,227
_000232
ABIE53_000233: ABIE53_000233 - ATP-dependent DNA helicase Rep, at 239,386 to 241,491
_000233
ABIE53_000234: ABIE53_000234 - scyllo-inositol 2-dehydrogenase (NADP+), at 241,910 to 242,959
_000234
Position (kb) 239
240
241
242 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.432 kb on + strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.433 kb on - strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.438 kb on + strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.439 kb on - strand, within ABIE53_000231 at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.519 kb on + strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.520 kb on - strand at 238.540 kb on + strand at 238.540 kb on + strand at 238.540 kb on + strand at 238.540 kb on + strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.541 kb on - strand at 238.602 kb on + strand at 238.602 kb on + strand at 238.602 kb on + strand at 238.603 kb on - strand at 238.797 kb on - strand, within ABIE53_000232 at 238.843 kb on + strand, within ABIE53_000232 at 238.843 kb on + strand, within ABIE53_000232 at 238.844 kb on - strand, within ABIE53_000232 at 238.887 kb on + strand, within ABIE53_000232 at 238.887 kb on + strand, within ABIE53_000232 at 238.887 kb on + strand, within ABIE53_000232 at 238.888 kb on - strand, within ABIE53_000232 at 238.888 kb on - strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.995 kb on + strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.996 kb on - strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.998 kb on + strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 238.999 kb on - strand, within ABIE53_000232 at 239.016 kb on + strand, within ABIE53_000232 at 239.016 kb on + strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.017 kb on - strand, within ABIE53_000232 at 239.161 kb on + strand, within ABIE53_000232 at 239.161 kb on + strand, within ABIE53_000232 at 239.161 kb on + strand, within ABIE53_000232 at 239.162 kb on - strand, within ABIE53_000232 at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.181 kb on + strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.182 kb on - strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.202 kb on + strand at 239.203 kb on - strand at 239.203 kb on - strand at 239.203 kb on - strand at 239.267 kb on + strand at 239.267 kb on + strand at 239.268 kb on - strand at 239.268 kb on - strand at 239.277 kb on - strand at 239.290 kb on - strand at 239.304 kb on - strand at 239.304 kb on - strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 239.367 kb on + strand at 240.213 kb on + strand, within ABIE53_000233 at 240.214 kb on - strand, within ABIE53_000233 at 240.948 kb on - strand, within ABIE53_000233 at 240.948 kb on - strand, within ABIE53_000233 at 241.498 kb on + strand at 241.498 kb on + strand at 241.498 kb on + strand at 241.498 kb on + strand at 241.498 kb on + strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.499 kb on - strand at 241.541 kb on + strand at 241.575 kb on + strand at 241.659 kb on + strand at 241.659 kb on + strand at 241.660 kb on - strand at 241.660 kb on - strand at 241.721 kb on + strand at 241.721 kb on + strand at 241.721 kb on + strand at 241.721 kb on + strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.722 kb on - strand at 241.743 kb on + strand at 242.049 kb on - strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.351 kb on + strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234 at 242.352 kb on - strand, within ABIE53_000234
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 238,432 + ABIE53_000231 0.88 -2.0 238,432 + ABIE53_000231 0.88 -1.0 238,432 + ABIE53_000231 0.88 +2.2 238,432 + ABIE53_000231 0.88 -1.1 238,432 + ABIE53_000231 0.88 -0.1 238,432 + ABIE53_000231 0.88 -0.6 238,432 + ABIE53_000231 0.88 +0.8 238,433 - ABIE53_000231 0.88 +1.0 238,433 - ABIE53_000231 0.88 -0.4 238,433 - ABIE53_000231 0.88 -0.7 238,433 - ABIE53_000231 0.88 -2.0 238,433 - ABIE53_000231 0.88 -0.7 238,433 - ABIE53_000231 0.88 +1.1 238,438 + ABIE53_000231 0.89 -1.7 238,438 + ABIE53_000231 0.89 -0.7 238,438 + ABIE53_000231 0.89 +0.2 238,438 + ABIE53_000231 0.89 -0.5 238,438 + ABIE53_000231 0.89 +1.6 238,438 + ABIE53_000231 0.89 +1.6 238,439 - ABIE53_000231 0.89 -1.5 238,439 - ABIE53_000231 0.89 +1.3 238,439 - ABIE53_000231 0.89 -1.0 238,439 - ABIE53_000231 0.89 -0.3 238,439 - ABIE53_000231 0.89 +1.0 238,519 + -1.2 238,519 + -0.9 238,519 + -0.2 238,519 + -1.0 238,519 + +1.4 238,519 + +1.4 238,519 + -0.6 238,520 - +0.6 238,520 - +0.0 238,520 - -0.3 238,520 - +0.0 238,520 - -0.7 238,520 - -0.7 238,520 - -0.7 238,540 + +1.9 238,540 + -2.4 238,540 + -1.8 238,540 + -1.2 238,541 - -0.4 238,541 - -0.7 238,541 - -2.2 238,541 - +1.1 238,541 - -1.0 238,602 + -0.2 238,602 + -0.5 238,602 + -0.2 238,603 - -0.4 238,797 - ABIE53_000232 0.25 -0.1 238,843 + ABIE53_000232 0.33 +1.3 238,843 + ABIE53_000232 0.33 +0.3 238,844 - ABIE53_000232 0.33 -0.1 238,887 + ABIE53_000232 0.41 +1.4 238,887 + ABIE53_000232 0.41 +1.6 238,887 + ABIE53_000232 0.41 +0.3 238,888 - ABIE53_000232 0.41 +0.6 238,888 - ABIE53_000232 0.41 -0.7 238,995 + ABIE53_000232 0.60 -1.3 238,995 + ABIE53_000232 0.60 -1.0 238,995 + ABIE53_000232 0.60 -1.8 238,995 + ABIE53_000232 0.60 +1.3 238,995 + ABIE53_000232 0.60 +0.1 238,995 + ABIE53_000232 0.60 -1.5 238,995 + ABIE53_000232 0.60 -1.7 238,995 + ABIE53_000232 0.60 -0.4 238,995 + ABIE53_000232 0.60 +3.2 238,995 + ABIE53_000232 0.60 +1.6 238,995 + ABIE53_000232 0.60 -1.6 238,995 + ABIE53_000232 0.60 +1.6 238,995 + ABIE53_000232 0.60 -0.9 238,995 + ABIE53_000232 0.60 -0.7 238,996 - ABIE53_000232 0.60 +0.6 238,996 - ABIE53_000232 0.60 +0.3 238,996 - ABIE53_000232 0.60 -1.0 238,996 - ABIE53_000232 0.60 -1.5 238,996 - ABIE53_000232 0.60 +2.6 238,996 - ABIE53_000232 0.60 -0.4 238,996 - ABIE53_000232 0.60 -0.4 238,996 - ABIE53_000232 0.60 -2.5 238,996 - ABIE53_000232 0.60 -0.7 238,996 - ABIE53_000232 0.60 -0.7 238,996 - ABIE53_000232 0.60 -0.2 238,996 - ABIE53_000232 0.60 -1.1 238,998 + ABIE53_000232 0.60 -1.0 238,998 + ABIE53_000232 0.60 -0.8 238,998 + ABIE53_000232 0.60 -0.3 238,998 + ABIE53_000232 0.60 -0.7 238,998 + ABIE53_000232 0.60 +1.5 238,998 + ABIE53_000232 0.60 -1.4 238,998 + ABIE53_000232 0.60 -1.9 238,999 - ABIE53_000232 0.60 -0.4 238,999 - ABIE53_000232 0.60 -0.8 238,999 - ABIE53_000232 0.60 +0.3 238,999 - ABIE53_000232 0.60 -1.2 238,999 - ABIE53_000232 0.60 -1.2 238,999 - ABIE53_000232 0.60 +0.0 238,999 - ABIE53_000232 0.60 +0.3 238,999 - ABIE53_000232 0.60 -1.1 238,999 - ABIE53_000232 0.60 -0.6 238,999 - ABIE53_000232 0.60 -1.4 238,999 - ABIE53_000232 0.60 -0.5 238,999 - ABIE53_000232 0.60 -0.4 239,016 + ABIE53_000232 0.63 -1.7 239,016 + ABIE53_000232 0.63 -0.8 239,017 - ABIE53_000232 0.63 -0.1 239,017 - ABIE53_000232 0.63 -0.1 239,017 - ABIE53_000232 0.63 +0.1 239,017 - ABIE53_000232 0.63 +0.6 239,161 + ABIE53_000232 0.88 -0.4 239,161 + ABIE53_000232 0.88 -0.8 239,161 + ABIE53_000232 0.88 -1.4 239,162 - ABIE53_000232 0.89 +0.0 239,181 + -1.5 239,181 + +0.6 239,181 + +0.6 239,181 + -0.3 239,181 + -1.0 239,181 + +0.6 239,182 - +0.1 239,182 - -0.7 239,182 - +0.2 239,182 - -0.3 239,182 - -1.3 239,182 - +2.4 239,202 + -0.8 239,202 + -1.4 239,202 + -1.5 239,202 + -0.7 239,202 + -2.1 239,202 + +0.0 239,203 - -1.4 239,203 - +0.6 239,203 - -1.2 239,267 + +0.8 239,267 + -0.7 239,268 - +1.6 239,268 - +0.6 239,277 - -1.5 239,290 - -1.1 239,304 - +0.0 239,304 - -0.6 239,367 + +0.1 239,367 + -0.4 239,367 + +1.0 239,367 + -1.0 239,367 + -1.0 239,367 + -0.6 240,213 + ABIE53_000233 0.39 -0.4 240,214 - ABIE53_000233 0.39 +0.0 240,948 - ABIE53_000233 0.74 +0.0 240,948 - ABIE53_000233 0.74 +3.2 241,498 + +0.0 241,498 + -1.0 241,498 + +0.3 241,498 + -0.6 241,498 + -0.2 241,499 - +0.6 241,499 - -2.2 241,499 - +2.4 241,499 - -0.2 241,499 - -0.9 241,499 - -0.5 241,499 - -0.3 241,499 - -0.6 241,499 - +1.6 241,499 - -1.0 241,541 + +1.6 241,575 + +0.0 241,659 + -0.2 241,659 + +1.4 241,660 - -0.9 241,660 - +0.0 241,721 + +0.0 241,721 + +0.4 241,721 + -0.6 241,721 + -1.4 241,722 - -0.6 241,722 - +1.6 241,722 - +1.6 241,722 - +1.6 241,722 - -0.5 241,743 + -0.2 242,049 - ABIE53_000234 0.13 -0.8 242,351 + ABIE53_000234 0.42 +0.6 242,351 + ABIE53_000234 0.42 +1.0 242,351 + ABIE53_000234 0.42 -1.0 242,351 + ABIE53_000234 0.42 -0.6 242,351 + ABIE53_000234 0.42 +0.5 242,351 + ABIE53_000234 0.42 -0.0 242,352 - ABIE53_000234 0.42 +1.6 242,352 - ABIE53_000234 0.42 -0.1 242,352 - ABIE53_000234 0.42 +0.7 242,352 - ABIE53_000234 0.42 -0.4 242,352 - ABIE53_000234 0.42 -1.1 242,352 - ABIE53_000234 0.42 +0.0 242,352 - ABIE53_000234 0.42 -2.4 242,352 - ABIE53_000234 0.42 -2.1
Or see this region's nucleotide sequence