Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE51_RS03375 and ABIE51_RS03380 are separated by 38 nucleotides ABIE51_RS03380 and ABIE51_RS03385 overlap by 4 nucleotides
ABIE51_RS03375: ABIE51_RS03375 - AraC family transcriptional regulator, at 747,441 to 748,421
_RS03375
ABIE51_RS03380: ABIE51_RS03380 - nuclear transport factor 2 family protein, at 748,460 to 748,912
_RS03380
ABIE51_RS03385: ABIE51_RS03385 - Gfo/Idh/MocA family oxidoreductase, at 748,909 to 750,000
_RS03385
Position (kb) 748
749 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 747.535 kb on + strand at 747.622 kb on + strand, within ABIE51_RS03375 at 747.623 kb on - strand, within ABIE51_RS03375 at 747.623 kb on - strand, within ABIE51_RS03375 at 747.820 kb on + strand, within ABIE51_RS03375 at 747.820 kb on + strand, within ABIE51_RS03375 at 747.821 kb on - strand, within ABIE51_RS03375 at 747.821 kb on - strand, within ABIE51_RS03375 at 747.999 kb on + strand, within ABIE51_RS03375 at 747.999 kb on + strand, within ABIE51_RS03375 at 747.999 kb on + strand, within ABIE51_RS03375 at 747.999 kb on + strand, within ABIE51_RS03375 at 747.999 kb on + strand, within ABIE51_RS03375 at 748.000 kb on - strand, within ABIE51_RS03375 at 748.000 kb on - strand, within ABIE51_RS03375 at 748.000 kb on - strand, within ABIE51_RS03375 at 748.000 kb on - strand, within ABIE51_RS03375 at 748.344 kb on + strand at 748.345 kb on - strand at 748.345 kb on - strand at 748.345 kb on - strand at 748.345 kb on - strand at 748.403 kb on - strand at 748.434 kb on - strand at 748.465 kb on + strand at 748.465 kb on + strand at 748.465 kb on + strand at 748.473 kb on + strand at 748.473 kb on + strand at 748.473 kb on + strand at 748.482 kb on + strand at 748.482 kb on + strand at 748.482 kb on + strand at 748.483 kb on - strand at 748.483 kb on - strand at 748.483 kb on - strand at 748.483 kb on - strand at 748.489 kb on - strand at 748.502 kb on + strand at 748.502 kb on + strand at 748.502 kb on + strand at 748.502 kb on + strand at 748.503 kb on - strand at 748.503 kb on - strand at 748.681 kb on + strand, within ABIE51_RS03380 at 748.681 kb on + strand, within ABIE51_RS03380 at 748.682 kb on - strand, within ABIE51_RS03380 at 748.742 kb on + strand, within ABIE51_RS03380 at 748.742 kb on + strand, within ABIE51_RS03380 at 748.742 kb on + strand, within ABIE51_RS03380 at 748.742 kb on + strand, within ABIE51_RS03380 at 748.743 kb on - strand, within ABIE51_RS03380 at 748.743 kb on - strand, within ABIE51_RS03380 at 748.743 kb on - strand, within ABIE51_RS03380 at 748.743 kb on - strand, within ABIE51_RS03380 at 748.779 kb on + strand, within ABIE51_RS03380 at 748.779 kb on + strand, within ABIE51_RS03380 at 748.779 kb on + strand, within ABIE51_RS03380 at 748.802 kb on + strand, within ABIE51_RS03380 at 748.891 kb on + strand at 748.891 kb on + strand at 748.892 kb on - strand at 749.009 kb on - strand at 749.024 kb on + strand, within ABIE51_RS03385 at 749.024 kb on + strand, within ABIE51_RS03385 at 749.024 kb on + strand, within ABIE51_RS03385 at 749.024 kb on + strand, within ABIE51_RS03385 at 749.024 kb on + strand, within ABIE51_RS03385 at 749.024 kb on + strand, within ABIE51_RS03385 at 749.025 kb on - strand, within ABIE51_RS03385 at 749.045 kb on + strand, within ABIE51_RS03385 at 749.045 kb on + strand, within ABIE51_RS03385 at 749.046 kb on - strand, within ABIE51_RS03385 at 749.046 kb on - strand, within ABIE51_RS03385 at 749.350 kb on + strand, within ABIE51_RS03385 at 749.351 kb on - strand, within ABIE51_RS03385 at 749.422 kb on + strand, within ABIE51_RS03385 at 749.428 kb on + strand, within ABIE51_RS03385 at 749.428 kb on + strand, within ABIE51_RS03385 at 749.428 kb on + strand, within ABIE51_RS03385 at 749.429 kb on - strand, within ABIE51_RS03385 at 749.429 kb on - strand, within ABIE51_RS03385 at 749.429 kb on - strand, within ABIE51_RS03385 at 749.746 kb on + strand, within ABIE51_RS03385 at 749.746 kb on + strand, within ABIE51_RS03385 at 749.747 kb on - strand, within ABIE51_RS03385 at 749.834 kb on - strand, within ABIE51_RS03385
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 747,535 + -0.2 747,622 + ABIE51_RS03375 0.18 -0.5 747,623 - ABIE51_RS03375 0.19 +0.5 747,623 - ABIE51_RS03375 0.19 -1.5 747,820 + ABIE51_RS03375 0.39 +2.5 747,820 + ABIE51_RS03375 0.39 -0.2 747,821 - ABIE51_RS03375 0.39 +0.3 747,821 - ABIE51_RS03375 0.39 +0.8 747,999 + ABIE51_RS03375 0.57 -1.9 747,999 + ABIE51_RS03375 0.57 -0.4 747,999 + ABIE51_RS03375 0.57 +0.1 747,999 + ABIE51_RS03375 0.57 -0.8 747,999 + ABIE51_RS03375 0.57 -2.9 748,000 - ABIE51_RS03375 0.57 +0.8 748,000 - ABIE51_RS03375 0.57 -1.0 748,000 - ABIE51_RS03375 0.57 +3.1 748,000 - ABIE51_RS03375 0.57 -0.2 748,344 + -1.0 748,345 - +0.2 748,345 - -1.3 748,345 - -0.1 748,345 - +0.5 748,403 - -1.7 748,434 - +0.7 748,465 + +0.8 748,465 + +0.1 748,465 + +0.0 748,473 + -0.4 748,473 + +0.1 748,473 + -1.0 748,482 + -0.5 748,482 + +0.2 748,482 + -0.7 748,483 - +0.2 748,483 - -0.2 748,483 - -0.7 748,483 - +0.3 748,489 - +1.4 748,502 + +0.2 748,502 + -0.0 748,502 + -0.1 748,502 + -0.1 748,503 - +0.1 748,503 - +0.5 748,681 + ABIE51_RS03380 0.49 -1.3 748,681 + ABIE51_RS03380 0.49 -1.0 748,682 - ABIE51_RS03380 0.49 +2.5 748,742 + ABIE51_RS03380 0.62 -0.6 748,742 + ABIE51_RS03380 0.62 +0.5 748,742 + ABIE51_RS03380 0.62 -1.6 748,742 + ABIE51_RS03380 0.62 +0.0 748,743 - ABIE51_RS03380 0.62 +0.0 748,743 - ABIE51_RS03380 0.62 -0.9 748,743 - ABIE51_RS03380 0.62 -0.1 748,743 - ABIE51_RS03380 0.62 -1.1 748,779 + ABIE51_RS03380 0.70 -0.6 748,779 + ABIE51_RS03380 0.70 +1.0 748,779 + ABIE51_RS03380 0.70 +0.7 748,802 + ABIE51_RS03380 0.75 -0.3 748,891 + +0.5 748,891 + +2.5 748,892 - +0.2 749,009 - -0.5 749,024 + ABIE51_RS03385 0.11 -0.0 749,024 + ABIE51_RS03385 0.11 +0.1 749,024 + ABIE51_RS03385 0.11 -0.8 749,024 + ABIE51_RS03385 0.11 +0.2 749,024 + ABIE51_RS03385 0.11 -1.0 749,024 + ABIE51_RS03385 0.11 +0.1 749,025 - ABIE51_RS03385 0.11 +0.7 749,045 + ABIE51_RS03385 0.12 -0.2 749,045 + ABIE51_RS03385 0.12 -2.4 749,046 - ABIE51_RS03385 0.13 +0.1 749,046 - ABIE51_RS03385 0.13 +0.6 749,350 + ABIE51_RS03385 0.40 -1.0 749,351 - ABIE51_RS03385 0.40 +0.4 749,422 + ABIE51_RS03385 0.47 -0.5 749,428 + ABIE51_RS03385 0.48 +0.2 749,428 + ABIE51_RS03385 0.48 -0.3 749,428 + ABIE51_RS03385 0.48 +1.0 749,429 - ABIE51_RS03385 0.48 +0.2 749,429 - ABIE51_RS03385 0.48 +0.5 749,429 - ABIE51_RS03385 0.48 -0.8 749,746 + ABIE51_RS03385 0.77 -2.4 749,746 + ABIE51_RS03385 0.77 +1.2 749,747 - ABIE51_RS03385 0.77 +0.6 749,834 - ABIE51_RS03385 0.85 -0.2
Or see this region's nucleotide sequence