Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04146 and SMc04145 are separated by 147 nucleotides SMc04145 and SMc04144 are separated by 63 nucleotides SMc04144 and SMc04143 are separated by 77 nucleotides
SMc04146: SMc04146 - phosphoketolase, at 123,688 to 126,141
SMc04146
SMc04145: SMc04145 - hypothetical protein, at 126,289 to 127,074
SMc04145
SMc04144: SMc04144 - dihydroxy-acid dehydratase, at 127,138 to 128,862
SMc04144
SMc04143: SMc04143 - transcriptional regulator, at 128,940 to 129,662
SMc04143
Position (kb) 127
128
129 Strain fitness (log2 ratio) -2
-1
0
1 at 126.143 kb on + strand at 126.143 kb on + strand at 126.143 kb on + strand at 126.143 kb on + strand at 126.144 kb on - strand at 126.144 kb on - strand at 126.144 kb on - strand at 126.170 kb on - strand at 126.213 kb on - strand at 126.330 kb on - strand at 126.432 kb on + strand, within SMc04145 at 126.608 kb on + strand, within SMc04145 at 126.617 kb on + strand, within SMc04145 at 126.618 kb on - strand, within SMc04145 at 126.618 kb on - strand, within SMc04145 at 126.618 kb on - strand, within SMc04145 at 126.618 kb on - strand, within SMc04145 at 126.629 kb on + strand, within SMc04145 at 126.803 kb on + strand, within SMc04145 at 126.803 kb on + strand, within SMc04145 at 126.803 kb on + strand, within SMc04145 at 126.803 kb on + strand, within SMc04145 at 126.803 kb on + strand, within SMc04145 at 126.804 kb on - strand, within SMc04145 at 127.055 kb on - strand at 127.060 kb on + strand at 127.078 kb on + strand at 127.078 kb on + strand at 127.078 kb on + strand at 127.079 kb on - strand at 127.079 kb on - strand at 127.164 kb on + strand at 127.239 kb on - strand at 127.250 kb on + strand at 127.389 kb on - strand, within SMc04144 at 127.622 kb on + strand, within SMc04144 at 127.622 kb on + strand, within SMc04144 at 127.892 kb on + strand, within SMc04144 at 127.893 kb on - strand, within SMc04144 at 127.895 kb on + strand, within SMc04144 at 127.895 kb on + strand, within SMc04144 at 127.896 kb on - strand, within SMc04144 at 127.896 kb on - strand, within SMc04144 at 128.352 kb on - strand, within SMc04144 at 128.393 kb on + strand, within SMc04144 at 128.394 kb on - strand, within SMc04144 at 128.588 kb on + strand, within SMc04144 at 128.588 kb on + strand, within SMc04144 at 128.589 kb on - strand, within SMc04144 at 128.589 kb on - strand, within SMc04144 at 128.712 kb on + strand at 128.760 kb on - strand at 128.760 kb on - strand at 128.771 kb on + strand at 128.772 kb on - strand at 128.950 kb on + strand at 128.950 kb on + strand at 128.951 kb on - strand at 128.951 kb on - strand at 128.951 kb on - strand at 128.951 kb on - strand at 129.000 kb on + strand at 129.000 kb on + strand at 129.001 kb on - strand at 129.072 kb on - strand, within SMc04143 at 129.161 kb on + strand, within SMc04143 at 129.234 kb on + strand, within SMc04143 at 129.235 kb on - strand, within SMc04143 at 129.317 kb on - strand, within SMc04143 at 129.558 kb on + strand, within SMc04143 at 129.558 kb on + strand, within SMc04143 at 129.559 kb on - strand, within SMc04143 at 129.559 kb on - strand, within SMc04143 at 129.559 kb on - strand, within SMc04143 at 129.610 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 126,143 + -1.0 126,143 + +0.2 126,143 + -0.3 126,143 + +0.1 126,144 - -0.2 126,144 - -0.1 126,144 - +0.5 126,170 - +0.0 126,213 - -0.0 126,330 - +0.8 126,432 + SMc04145 0.18 +0.2 126,608 + SMc04145 0.41 +0.8 126,617 + SMc04145 0.42 -0.8 126,618 - SMc04145 0.42 -1.3 126,618 - SMc04145 0.42 -2.0 126,618 - SMc04145 0.42 -0.4 126,618 - SMc04145 0.42 -0.3 126,629 + SMc04145 0.43 +0.0 126,803 + SMc04145 0.65 -0.2 126,803 + SMc04145 0.65 +0.9 126,803 + SMc04145 0.65 +0.2 126,803 + SMc04145 0.65 +0.4 126,803 + SMc04145 0.65 +0.1 126,804 - SMc04145 0.66 +1.0 127,055 - +0.2 127,060 + -0.3 127,078 + -0.4 127,078 + +0.2 127,078 + -0.6 127,079 - +0.1 127,079 - -0.5 127,164 + -0.4 127,239 - -0.0 127,250 + +0.1 127,389 - SMc04144 0.15 +0.4 127,622 + SMc04144 0.28 -1.3 127,622 + SMc04144 0.28 +0.0 127,892 + SMc04144 0.44 -1.5 127,893 - SMc04144 0.44 -1.1 127,895 + SMc04144 0.44 -0.2 127,895 + SMc04144 0.44 +0.7 127,896 - SMc04144 0.44 -0.9 127,896 - SMc04144 0.44 +0.5 128,352 - SMc04144 0.70 +0.8 128,393 + SMc04144 0.73 +0.0 128,394 - SMc04144 0.73 -0.6 128,588 + SMc04144 0.84 +0.6 128,588 + SMc04144 0.84 +0.6 128,589 - SMc04144 0.84 -0.2 128,589 - SMc04144 0.84 -0.7 128,712 + -0.3 128,760 - +0.3 128,760 - -0.4 128,771 + +0.1 128,772 - -0.6 128,950 + +0.4 128,950 + -0.1 128,951 - +0.3 128,951 - -0.1 128,951 - -0.3 128,951 - -0.8 129,000 + -0.2 129,000 + -0.6 129,001 - +0.2 129,072 - SMc04143 0.18 -1.1 129,161 + SMc04143 0.31 -0.0 129,234 + SMc04143 0.41 +0.8 129,235 - SMc04143 0.41 +1.4 129,317 - SMc04143 0.52 -0.0 129,558 + SMc04143 0.85 -0.5 129,558 + SMc04143 0.85 -0.1 129,559 - SMc04143 0.86 -0.3 129,559 - SMc04143 0.86 +0.8 129,559 - SMc04143 0.86 +0.4 129,610 - -0.5
Or see this region's nucleotide sequence