Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02577 and SMc02578 are separated by 206 nucleotides SMc02578 and SMc02579 are separated by 151 nucleotides
SMc02577: SMc02577 - ATP-dependent protease ATP-binding subunit HslU, at 62,602 to 63,909
SMc02577
SMc02578: SMc02578 - hypothetical protein, at 64,116 to 65,066
SMc02578
SMc02579: SMc02579 - cytochrome P450 monooxygenase, at 65,218 to 66,618
SMc02579
Position (kb) 64
65
66 Strain fitness (log2 ratio) -2
-1
0
1 at 63.241 kb on + strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.640 kb on + strand, within SMc02577 at 63.641 kb on - strand, within SMc02577 at 63.641 kb on - strand, within SMc02577 at 63.847 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.900 kb on + strand at 63.900 kb on + strand at 63.901 kb on - strand at 63.901 kb on - strand at 63.901 kb on - strand at 64.023 kb on + strand at 64.838 kb on + strand, within SMc02578 at 65.204 kb on - strand at 65.341 kb on + strand at 65.341 kb on + strand at 65.389 kb on - strand, within SMc02579 at 65.417 kb on - strand, within SMc02579 at 65.444 kb on - strand, within SMc02579 at 66.009 kb on + strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 63,241 + SMc02577 0.49 +0.2 63,241 + SMc02577 0.49 -0.0 63,242 - SMc02577 0.49 +0.2 63,242 - SMc02577 0.49 -0.2 63,242 - SMc02577 0.49 -0.5 63,640 + SMc02577 0.79 -0.7 63,641 - SMc02577 0.79 +0.6 63,641 - SMc02577 0.79 +0.2 63,847 + +0.1 63,898 + -2.3 63,898 + +0.2 63,898 + -1.0 63,898 + +0.4 63,900 + -0.4 63,900 + +0.4 63,901 - -0.4 63,901 - -0.5 63,901 - +0.2 64,023 + +0.6 64,838 + SMc02578 0.76 -1.3 65,204 - -0.0 65,341 + +1.3 65,341 + -1.1 65,389 - SMc02579 0.12 +0.8 65,417 - SMc02579 0.14 +0.1 65,444 - SMc02579 0.16 -0.4 66,009 + SMc02579 0.56 +0.1 66,010 - SMc02579 0.57 +0.8 66,010 - SMc02579 0.57 +0.2 66,010 - SMc02579 0.57 +0.7 66,010 - SMc02579 0.57 +0.4
Or see this region's nucleotide sequence