Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02139 and SMc02138 are separated by 410 nucleotides SMc02138 and SMc02137 are separated by 74 nucleotides
SMc02139: SMc02139 - hypothetical protein, at 573,161 to 573,682
SMc02139
SMc02138: SMc02138 - acetylornithine transaminase, at 574,093 to 575,292
SMc02138
SMc02137: SMc02137 - ornithine carbamoyltransferase, at 575,367 to 576,278
SMc02137
Position (kb) 574
575
576 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 574.007 kb on + strand at 574.124 kb on - strand at 574.124 kb on - strand at 574.427 kb on - strand, within SMc02138 at 574.427 kb on - strand, within SMc02138 at 574.531 kb on + strand, within SMc02138 at 574.531 kb on + strand, within SMc02138 at 574.532 kb on - strand, within SMc02138 at 574.568 kb on - strand, within SMc02138 at 574.757 kb on + strand, within SMc02138 at 574.758 kb on - strand, within SMc02138 at 574.810 kb on - strand, within SMc02138 at 574.916 kb on - strand, within SMc02138 at 575.366 kb on + strand at 575.366 kb on + strand at 575.366 kb on + strand at 575.366 kb on + strand at 575.367 kb on - strand at 575.367 kb on - strand at 575.367 kb on - strand at 575.653 kb on - strand, within SMc02137 at 575.663 kb on + strand, within SMc02137 at 575.663 kb on + strand, within SMc02137 at 575.750 kb on + strand, within SMc02137 at 575.751 kb on - strand, within SMc02137
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 574,007 + -1.1 574,124 - -4.3 574,124 - -2.8 574,427 - SMc02138 0.28 -3.5 574,427 - SMc02138 0.28 -1.8 574,531 + SMc02138 0.36 -1.1 574,531 + SMc02138 0.36 -3.4 574,532 - SMc02138 0.37 -2.4 574,568 - SMc02138 0.40 -5.6 574,757 + SMc02138 0.55 -2.5 574,758 - SMc02138 0.55 -6.0 574,810 - SMc02138 0.60 -4.3 574,916 - SMc02138 0.69 -5.3 575,366 + +0.5 575,366 + +0.0 575,366 + -0.1 575,366 + +0.1 575,367 - -6.0 575,367 - -4.2 575,367 - -6.3 575,653 - SMc02137 0.31 -4.5 575,663 + SMc02137 0.32 -2.4 575,663 + SMc02137 0.32 -3.3 575,750 + SMc02137 0.42 -3.0 575,751 - SMc02137 0.42 -4.0
Or see this region's nucleotide sequence