Strain Fitness in Sinorhizobium meliloti 1021 around SMc01126

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01127 and SMc01126 are separated by 278 nucleotidesSMc01126 and SMc01125 are separated by 102 nucleotides SMc01127: SMc01127 - hypothetical protein, at 423,198 to 424,088 SMc01127 SMc01126: SMc01126 - malic enzyme, at 424,367 to 426,652 SMc01126 SMc01125: SMc01125 - DNA mismatch repair protein MutS, at 426,755 to 429,505 SMc01125 Position (kb) 424 425 426 427Strain fitness (log2 ratio) -2 -1 0 1 2at 423.473 kb on + strand, within SMc01127at 423.473 kb on + strand, within SMc01127at 423.473 kb on + strand, within SMc01127at 423.584 kb on - strandat 423.702 kb on + strand, within SMc01127at 423.800 kb on + strand, within SMc01127at 423.930 kb on + strand, within SMc01127at 423.931 kb on - strand, within SMc01127at 423.931 kb on - strand, within SMc01127at 423.933 kb on - strand, within SMc01127at 423.933 kb on - strand, within SMc01127at 423.933 kb on - strand, within SMc01127at 424.129 kb on - strandat 424.138 kb on + strandat 424.139 kb on - strandat 424.229 kb on - strandat 424.229 kb on - strandat 424.229 kb on - strandat 424.642 kb on - strand, within SMc01126at 424.859 kb on - strand, within SMc01126at 424.950 kb on + strand, within SMc01126at 424.970 kb on - strand, within SMc01126at 425.061 kb on + strandat 425.061 kb on + strand, within SMc01126at 425.061 kb on + strand, within SMc01126at 425.062 kb on - strand, within SMc01126at 425.062 kb on - strand, within SMc01126at 425.099 kb on - strand, within SMc01126at 425.099 kb on - strand, within SMc01126at 425.101 kb on - strand, within SMc01126at 425.241 kb on + strand, within SMc01126at 425.379 kb on + strand, within SMc01126at 425.380 kb on - strand, within SMc01126at 425.380 kb on - strand, within SMc01126at 425.425 kb on + strand, within SMc01126at 425.426 kb on - strand, within SMc01126at 425.426 kb on - strand, within SMc01126at 425.426 kb on - strand, within SMc01126at 425.491 kb on + strand, within SMc01126at 425.491 kb on + strand, within SMc01126at 425.492 kb on - strand, within SMc01126at 425.492 kb on - strand, within SMc01126at 425.492 kb on - strand, within SMc01126at 425.493 kb on + strand, within SMc01126at 425.494 kb on - strand, within SMc01126at 425.527 kb on - strand, within SMc01126at 425.648 kb on - strand, within SMc01126at 425.650 kb on - strand, within SMc01126at 425.686 kb on - strand, within SMc01126at 425.946 kb on + strand, within SMc01126at 425.946 kb on + strand, within SMc01126at 425.946 kb on + strand, within SMc01126at 425.946 kb on + strand, within SMc01126at 425.947 kb on - strand, within SMc01126at 425.947 kb on - strand, within SMc01126at 425.947 kb on - strand, within SMc01126at 425.947 kb on - strand, within SMc01126at 426.445 kb on - strandat 426.445 kb on - strandat 426.450 kb on + strandat 426.450 kb on + strandat 426.711 kb on + strandat 426.726 kb on - strandat 426.902 kb on + strandat 426.967 kb on + strandat 426.967 kb on + strandat 426.967 kb on + strandat 427.047 kb on - strand, within SMc01125at 427.220 kb on + strand, within SMc01125at 427.221 kb on - strand, within SMc01125at 427.265 kb on + strand, within SMc01125at 427.266 kb on - strand, within SMc01125at 427.266 kb on - strand, within SMc01125at 427.266 kb on - strand, within SMc01125at 427.266 kb on - strand, within SMc01125at 427.344 kb on + strand, within SMc01125at 427.345 kb on - strand, within SMc01125at 427.496 kb on + strand, within SMc01125at 427.499 kb on + strand, within SMc01125at 427.499 kb on + strand, within SMc01125at 427.574 kb on + strand, within SMc01125at 427.574 kb on + strand, within SMc01125at 427.574 kb on + strand, within SMc01125at 427.575 kb on - strand, within SMc01125at 427.575 kb on - strand, within SMc01125

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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423,473 + SMc01127 0.31 +0.5
423,473 + SMc01127 0.31 +0.0
423,473 + SMc01127 0.31 -0.1
423,584 - +1.4
423,702 + SMc01127 0.57 +0.1
423,800 + SMc01127 0.68 +0.8
423,930 + SMc01127 0.82 +2.3
423,931 - SMc01127 0.82 +0.5
423,931 - SMc01127 0.82 +0.5
423,933 - SMc01127 0.82 +0.7
423,933 - SMc01127 0.82 -0.9
423,933 - SMc01127 0.82 +0.5
424,129 - +1.0
424,138 + +0.2
424,139 - +0.1
424,229 - +0.5
424,229 - +0.4
424,229 - -0.1
424,642 - SMc01126 0.12 -0.5
424,859 - SMc01126 0.22 -1.8
424,950 + SMc01126 0.26 +0.9
424,970 - SMc01126 0.26 -0.7
425,061 + +0.8
425,061 + SMc01126 0.30 -0.1
425,061 + SMc01126 0.30 -2.4
425,062 - SMc01126 0.30 -2.3
425,062 - SMc01126 0.30 -1.9
425,099 - SMc01126 0.32 -0.5
425,099 - SMc01126 0.32 +0.6
425,101 - SMc01126 0.32 -0.6
425,241 + SMc01126 0.38 +0.8
425,379 + SMc01126 0.44 -0.0
425,380 - SMc01126 0.44 +0.0
425,380 - SMc01126 0.44 +0.0
425,425 + SMc01126 0.46 +0.0
425,426 - SMc01126 0.46 -0.1
425,426 - SMc01126 0.46 -0.2
425,426 - SMc01126 0.46 -0.2
425,491 + SMc01126 0.49 -1.0
425,491 + SMc01126 0.49 +0.2
425,492 - SMc01126 0.49 +1.0
425,492 - SMc01126 0.49 -0.6
425,492 - SMc01126 0.49 -0.9
425,493 + SMc01126 0.49 -0.2
425,494 - SMc01126 0.49 -0.2
425,527 - SMc01126 0.51 -0.1
425,648 - SMc01126 0.56 +0.8
425,650 - SMc01126 0.56 -0.4
425,686 - SMc01126 0.58 -1.0
425,946 + SMc01126 0.69 -0.7
425,946 + SMc01126 0.69 +0.6
425,946 + SMc01126 0.69 -0.0
425,946 + SMc01126 0.69 -0.0
425,947 - SMc01126 0.69 +0.2
425,947 - SMc01126 0.69 +0.5
425,947 - SMc01126 0.69 -0.2
425,947 - SMc01126 0.69 -0.9
426,445 - +0.0
426,445 - +0.3
426,450 + +0.1
426,450 + +0.3
426,711 + -0.0
426,726 - +0.3
426,902 + -0.6
426,967 + +0.1
426,967 + +0.1
426,967 + +0.5
427,047 - SMc01125 0.11 +0.1
427,220 + SMc01125 0.17 -0.1
427,221 - SMc01125 0.17 -0.2
427,265 + SMc01125 0.19 -0.1
427,266 - SMc01125 0.19 -0.0
427,266 - SMc01125 0.19 +1.6
427,266 - SMc01125 0.19 +0.9
427,266 - SMc01125 0.19 +0.6
427,344 + SMc01125 0.21 -0.4
427,345 - SMc01125 0.21 +0.3
427,496 + SMc01125 0.27 +1.0
427,499 + SMc01125 0.27 -1.2
427,499 + SMc01125 0.27 -0.8
427,574 + SMc01125 0.30 +1.2
427,574 + SMc01125 0.30 +0.1
427,574 + SMc01125 0.30 -0.3
427,575 - SMc01125 0.30 -0.5
427,575 - SMc01125 0.30 -0.3

Or see this region's nucleotide sequence