Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00965 and SMc00964 are separated by 4 nucleotides SMc00964 and SMc00963 are separated by 31 nucleotides SMc00963 and SMc00962 overlap by 7 nucleotides SMc00962 and SMc00961 are separated by 133 nucleotides
SMc00965: SMc00965 - hypothetical protein, at 974,919 to 976,415
SMc00965
SMc00964: SMc00964 - hypothetical protein, at 976,420 to 976,983
SMc00964
SMc00963: SMc00963 - hypothetical protein, at 977,015 to 977,620
SMc00963
SMc00962: SMc00962 - ABC transporter ATP-binding protein, at 977,614 to 978,294
SMc00962
SMc00961: SMc00961 - hypothetical protein, at 978,428 to 979,627
SMc00961
Position (kb) 977
978 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 976.122 kb on + strand, within SMc00965 at 976.983 kb on + strand at 976.983 kb on + strand at 976.983 kb on + strand at 976.983 kb on + strand at 976.984 kb on - strand at 976.984 kb on - strand at 976.985 kb on + strand at 976.985 kb on + strand at 976.985 kb on + strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.986 kb on - strand at 976.992 kb on - strand at 976.992 kb on - strand at 976.992 kb on - strand at 977.001 kb on + strand at 977.002 kb on - strand at 977.017 kb on - strand at 977.158 kb on - strand, within SMc00963 at 977.265 kb on - strand, within SMc00963 at 977.402 kb on + strand, within SMc00963 at 977.403 kb on - strand, within SMc00963 at 977.466 kb on + strand, within SMc00963 at 977.604 kb on + strand at 977.605 kb on - strand at 977.605 kb on - strand at 977.605 kb on - strand at 978.330 kb on + strand at 978.331 kb on - strand at 978.333 kb on - strand at 978.333 kb on - strand at 978.348 kb on + strand at 978.349 kb on - strand at 978.360 kb on + strand at 978.361 kb on - strand at 978.372 kb on + strand at 978.372 kb on + strand at 978.372 kb on + strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.373 kb on - strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.378 kb on + strand at 978.379 kb on - strand at 978.379 kb on - strand at 978.379 kb on - strand at 978.570 kb on + strand, within SMc00961 at 978.570 kb on + strand, within SMc00961 at 978.570 kb on + strand, within SMc00961 at 978.571 kb on - strand, within SMc00961
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 976,122 + SMc00965 0.80 -0.3 976,983 + -0.1 976,983 + -0.8 976,983 + -1.1 976,983 + -2.1 976,984 - -1.2 976,984 - +0.1 976,985 + -3.8 976,985 + -2.2 976,985 + -5.2 976,986 - -1.1 976,986 - +0.3 976,986 - -1.4 976,986 - -0.5 976,992 - +0.6 976,992 - +0.3 976,992 - +0.5 977,001 + -0.8 977,002 - -0.8 977,017 - +0.7 977,158 - SMc00963 0.24 -4.6 977,265 - SMc00963 0.41 -2.1 977,402 + SMc00963 0.64 -4.0 977,403 - SMc00963 0.64 -2.5 977,466 + SMc00963 0.74 -3.8 977,604 + -4.5 977,605 - -0.8 977,605 - -0.2 977,605 - +0.8 978,330 + -0.7 978,331 - +0.2 978,333 - -1.0 978,333 - +0.3 978,348 + -1.6 978,349 - +0.5 978,360 + -0.5 978,361 - -0.2 978,372 + -1.6 978,372 + -2.2 978,372 + -3.2 978,373 - -0.1 978,373 - +0.2 978,373 - +0.4 978,373 - +0.4 978,373 - -1.1 978,378 + +0.9 978,378 + +2.2 978,378 + -0.4 978,378 + -0.5 978,378 + -0.0 978,378 + -0.1 978,378 + -0.4 978,379 - -0.1 978,379 - +0.3 978,379 - +0.5 978,570 + SMc00961 0.12 -0.4 978,570 + SMc00961 0.12 +0.3 978,570 + SMc00961 0.12 -0.3 978,571 - SMc00961 0.12 -0.1
Or see this region's nucleotide sequence