Strain Fitness in Sinorhizobium meliloti 1021 around SMc00884

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00885 and SMc00884 are separated by 364 nucleotidesSMc00884 and SMc00883 are separated by 90 nucleotidesSMc00883 and SMc00882 overlap by 4 nucleotides SMc00885: SMc00885 - transmembrane signal peptide protein, at 900,992 to 901,630 SMc00885 SMc00884: SMc00884 - dihydroxy-acid dehydratase, at 901,995 to 903,719 SMc00884 SMc00883: SMc00883 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) (from data), at 903,810 to 904,694 SMc00883 SMc00882: SMc00882 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 904,691 to 905,329 SMc00882 Position (kb) 901 902 903 904Strain fitness (log2 ratio) -2 -1 0 1at 901.036 kb on + strandat 901.037 kb on - strandat 901.336 kb on - strand, within SMc00885at 901.352 kb on - strand, within SMc00885at 901.353 kb on + strand, within SMc00885at 901.353 kb on + strand, within SMc00885at 901.353 kb on + strand, within SMc00885at 901.353 kb on + strand, within SMc00885at 901.353 kb on + strand, within SMc00885at 901.354 kb on - strand, within SMc00885at 901.354 kb on - strand, within SMc00885at 901.354 kb on - strand, within SMc00885at 901.395 kb on + strand, within SMc00885at 901.395 kb on + strand, within SMc00885at 901.395 kb on + strand, within SMc00885at 901.395 kb on + strand, within SMc00885at 901.396 kb on - strand, within SMc00885at 901.613 kb on + strandat 901.613 kb on + strandat 901.613 kb on + strandat 901.614 kb on - strandat 901.614 kb on - strandat 901.614 kb on - strandat 901.615 kb on + strandat 901.615 kb on + strandat 901.615 kb on + strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.616 kb on - strandat 901.928 kb on + strandat 901.929 kb on - strandat 901.929 kb on - strandat 901.980 kb on + strandat 901.980 kb on + strandat 901.981 kb on - strandat 901.996 kb on + strandat 901.996 kb on + strandat 901.997 kb on - strandat 901.997 kb on - strandat 902.086 kb on + strandat 902.095 kb on + strandat 902.095 kb on + strandat 902.095 kb on + strandat 902.096 kb on - strandat 902.392 kb on + strand, within SMc00884at 902.497 kb on + strand, within SMc00884at 902.497 kb on + strand, within SMc00884at 902.498 kb on - strand, within SMc00884at 902.498 kb on - strand, within SMc00884at 902.645 kb on - strand, within SMc00884at 902.645 kb on - strand, within SMc00884at 902.776 kb on + strand, within SMc00884at 902.776 kb on + strand, within SMc00884at 902.776 kb on + strand, within SMc00884at 902.776 kb on + strand, within SMc00884at 902.777 kb on - strand, within SMc00884at 902.856 kb on - strand, within SMc00884at 903.382 kb on + strand, within SMc00884at 903.399 kb on + strand, within SMc00884at 903.537 kb on - strand, within SMc00884at 903.582 kb on + strandat 903.811 kb on + strandat 903.811 kb on + strandat 903.812 kb on - strandat 903.994 kb on + strand, within SMc00883at 904.022 kb on + strand, within SMc00883at 904.024 kb on + strand, within SMc00883at 904.024 kb on + strand, within SMc00883at 904.167 kb on + strand, within SMc00883at 904.167 kb on + strand, within SMc00883at 904.167 kb on + strand, within SMc00883at 904.167 kb on + strand, within SMc00883at 904.168 kb on - strand, within SMc00883at 904.265 kb on + strand, within SMc00883at 904.265 kb on + strand, within SMc00883at 904.266 kb on - strand, within SMc00883at 904.300 kb on + strand, within SMc00883at 904.300 kb on + strand, within SMc00883at 904.300 kb on + strand, within SMc00883at 904.301 kb on - strand, within SMc00883at 904.586 kb on + strand, within SMc00883at 904.586 kb on + strand, within SMc00883at 904.587 kb on - strand, within SMc00883at 904.587 kb on - strand, within SMc00883at 904.587 kb on - strand, within SMc00883at 904.587 kb on - strand, within SMc00883at 904.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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901,036 + -0.2
901,037 - -0.5
901,336 - SMc00885 0.54 +0.4
901,352 - SMc00885 0.56 +1.0
901,353 + SMc00885 0.56 -1.0
901,353 + SMc00885 0.56 -0.4
901,353 + SMc00885 0.56 -0.1
901,353 + SMc00885 0.56 -1.1
901,353 + SMc00885 0.56 -0.4
901,354 - SMc00885 0.57 -0.3
901,354 - SMc00885 0.57 +0.1
901,354 - SMc00885 0.57 +0.2
901,395 + SMc00885 0.63 -0.7
901,395 + SMc00885 0.63 -0.2
901,395 + SMc00885 0.63 +0.2
901,395 + SMc00885 0.63 +0.0
901,396 - SMc00885 0.63 +0.1
901,613 + +0.2
901,613 + -1.9
901,613 + +0.6
901,614 - -1.1
901,614 - +0.6
901,614 - +0.4
901,615 + +0.2
901,615 + -0.4
901,615 + -0.7
901,616 - +0.2
901,616 - +0.0
901,616 - +1.0
901,616 - +0.4
901,616 - +0.1
901,616 - -0.3
901,616 - +1.0
901,616 - +0.0
901,616 - +0.1
901,928 + +0.1
901,929 - -0.0
901,929 - -0.0
901,980 + +1.0
901,980 + -0.6
901,981 - -0.3
901,996 + -0.4
901,996 + -0.2
901,997 - -0.3
901,997 - -0.2
902,086 + -0.2
902,095 + +0.1
902,095 + -0.4
902,095 + +0.4
902,096 - -0.0
902,392 + SMc00884 0.23 -0.0
902,497 + SMc00884 0.29 -0.4
902,497 + SMc00884 0.29 +0.9
902,498 - SMc00884 0.29 -1.2
902,498 - SMc00884 0.29 -0.8
902,645 - SMc00884 0.38 -1.0
902,645 - SMc00884 0.38 -0.4
902,776 + SMc00884 0.45 +0.1
902,776 + SMc00884 0.45 -0.2
902,776 + SMc00884 0.45 -0.4
902,776 + SMc00884 0.45 -1.0
902,777 - SMc00884 0.45 -0.3
902,856 - SMc00884 0.50 +0.7
903,382 + SMc00884 0.80 -0.3
903,399 + SMc00884 0.81 -0.3
903,537 - SMc00884 0.89 -0.6
903,582 + -0.0
903,811 + +0.4
903,811 + -0.2
903,812 - -1.0
903,994 + SMc00883 0.21 +0.4
904,022 + SMc00883 0.24 -1.2
904,024 + SMc00883 0.24 -0.3
904,024 + SMc00883 0.24 +0.3
904,167 + SMc00883 0.40 -1.7
904,167 + SMc00883 0.40 +0.8
904,167 + SMc00883 0.40 +0.6
904,167 + SMc00883 0.40 +0.4
904,168 - SMc00883 0.40 +1.0
904,265 + SMc00883 0.51 -0.0
904,265 + SMc00883 0.51 +0.0
904,266 - SMc00883 0.52 -0.3
904,300 + SMc00883 0.55 -1.0
904,300 + SMc00883 0.55 +0.1
904,300 + SMc00883 0.55 -0.8
904,301 - SMc00883 0.55 +0.1
904,586 + SMc00883 0.88 -0.1
904,586 + SMc00883 0.88 +0.3
904,587 - SMc00883 0.88 +0.1
904,587 - SMc00883 0.88 +1.1
904,587 - SMc00883 0.88 +0.8
904,587 - SMc00883 0.88 -0.1
904,707 + -0.6

Or see this region's nucleotide sequence