Strain Fitness in Sinorhizobium meliloti 1021 around SMc00723

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00725 and SMc00724 are separated by 195 nucleotidesSMc00724 and SMc00723 are separated by 14 nucleotidesSMc00723 and SMc00722 are separated by 140 nucleotides SMc00725: SMc00725 - argininosuccinate lyase, at 2,854,243 to 2,855,646 SMc00725 SMc00724: SMc00724 - hypothetical protein, at 2,855,842 to 2,856,042 SMc00724 SMc00723: SMc00723 - diaminopimelate DAP decarboxylase, at 2,856,057 to 2,857,325 SMc00723 SMc00722: SMc00722 - hypothetical protein, at 2,857,466 to 2,860,123 SMc00722 Position (kb) 2856 2857 2858Strain fitness (log2 ratio) -1 0 1 2at 2855.222 kb on - strand, within SMc00725at 2855.539 kb on + strandat 2855.539 kb on + strandat 2855.644 kb on + strandat 2855.645 kb on - strandat 2855.667 kb on + strandat 2857.413 kb on + strandat 2857.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,855,222 - SMc00725 0.70 +2.0
2,855,539 + +1.0
2,855,539 + +1.2
2,855,644 + -0.2
2,855,645 - +0.5
2,855,667 + +0.3
2,857,413 + +0.9
2,857,413 + -0.0

Or see this region's nucleotide sequence