Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00696 and SMc00695 are separated by 4 nucleotides SMc00695 and SMc00694 are separated by 84 nucleotides SMc00694 and SMc00693 overlap by 4 nucleotides SMc00693 and SMc00692 are separated by 287 nucleotides
SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673
SMc00696
SMc00695: SMc00695 - shikimate kinase, at 2,884,678 to 2,885,256
SMc00695
SMc00694: SMc00694 - hypothetical protein, at 2,885,341 to 2,885,643
SMc00694
SMc00693: SMc00693 - hypothetical protein, at 2,885,640 to 2,885,915
SMc00693
SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352
SMc00692
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-1
0
1
2 at 2885.338 kb on + strand at 2885.339 kb on - strand at 2885.339 kb on - strand at 2885.339 kb on - strand at 2885.342 kb on + strand at 2885.366 kb on + strand at 2885.397 kb on + strand, within SMc00694 at 2885.397 kb on + strand, within SMc00694 at 2885.397 kb on + strand, within SMc00694 at 2885.401 kb on + strand, within SMc00694 at 2885.402 kb on - strand, within SMc00694 at 2885.402 kb on - strand, within SMc00694 at 2885.423 kb on + strand, within SMc00694 at 2885.424 kb on - strand, within SMc00694 at 2885.458 kb on - strand, within SMc00694 at 2885.458 kb on - strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.546 kb on + strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.547 kb on - strand, within SMc00694 at 2885.568 kb on + strand, within SMc00694 at 2885.600 kb on - strand, within SMc00694 at 2885.600 kb on - strand, within SMc00694 at 2885.929 kb on - strand at 2885.934 kb on + strand at 2886.026 kb on + strand at 2886.090 kb on + strand at 2886.090 kb on + strand at 2886.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 2,885,338 + -0.5 2,885,339 - +0.4 2,885,339 - +0.1 2,885,339 - +0.0 2,885,342 + +2.0 2,885,366 + +0.3 2,885,397 + SMc00694 0.18 -0.2 2,885,397 + SMc00694 0.18 -0.2 2,885,397 + SMc00694 0.18 -1.3 2,885,401 + SMc00694 0.20 -0.8 2,885,402 - SMc00694 0.20 +0.5 2,885,402 - SMc00694 0.20 +0.4 2,885,423 + SMc00694 0.27 -0.1 2,885,424 - SMc00694 0.27 +0.2 2,885,458 - SMc00694 0.39 -0.4 2,885,458 - SMc00694 0.39 +1.0 2,885,546 + SMc00694 0.68 -0.3 2,885,546 + SMc00694 0.68 +0.6 2,885,546 + SMc00694 0.68 -0.1 2,885,547 - SMc00694 0.68 +0.3 2,885,547 - SMc00694 0.68 -0.0 2,885,547 - SMc00694 0.68 +0.2 2,885,568 + SMc00694 0.75 -0.3 2,885,600 - SMc00694 0.85 +0.7 2,885,600 - SMc00694 0.85 -0.3 2,885,929 - -0.7 2,885,934 + +0.7 2,886,026 + +0.2 2,886,090 + -0.4 2,886,090 + +0.2 2,886,116 + +0.7
Or see this region's nucleotide sequence