Strain Fitness in Sinorhizobium meliloti 1021 around SMc00695

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00696 and SMc00695 are separated by 4 nucleotidesSMc00695 and SMc00694 are separated by 84 nucleotidesSMc00694 and SMc00693 overlap by 4 nucleotidesSMc00693 and SMc00692 are separated by 287 nucleotides SMc00696: SMc00696 - 3-dehydroquinate synthase, at 2,883,540 to 2,884,673 SMc00696 SMc00695: SMc00695 - shikimate kinase, at 2,884,678 to 2,885,256 SMc00695 SMc00694: SMc00694 - hypothetical protein, at 2,885,341 to 2,885,643 SMc00694 SMc00693: SMc00693 - hypothetical protein, at 2,885,640 to 2,885,915 SMc00693 SMc00692: SMc00692 - signal peptide protein, at 2,886,203 to 2,886,352 SMc00692 Position (kb) 2884 2885 2886Strain fitness (log2 ratio) -1 0 1 2at 2885.338 kb on + strandat 2885.339 kb on - strandat 2885.339 kb on - strandat 2885.339 kb on - strandat 2885.342 kb on + strandat 2885.366 kb on + strandat 2885.397 kb on + strand, within SMc00694at 2885.397 kb on + strand, within SMc00694at 2885.397 kb on + strand, within SMc00694at 2885.401 kb on + strand, within SMc00694at 2885.402 kb on - strand, within SMc00694at 2885.402 kb on - strand, within SMc00694at 2885.423 kb on + strand, within SMc00694at 2885.424 kb on - strand, within SMc00694at 2885.458 kb on - strand, within SMc00694at 2885.458 kb on - strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.546 kb on + strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.547 kb on - strand, within SMc00694at 2885.568 kb on + strand, within SMc00694at 2885.600 kb on - strand, within SMc00694at 2885.600 kb on - strand, within SMc00694at 2885.929 kb on - strandat 2885.934 kb on + strandat 2886.026 kb on + strandat 2886.090 kb on + strandat 2886.090 kb on + strandat 2886.116 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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2,885,338 + -0.5
2,885,339 - +0.4
2,885,339 - +0.1
2,885,339 - +0.0
2,885,342 + +2.0
2,885,366 + +0.3
2,885,397 + SMc00694 0.18 -0.2
2,885,397 + SMc00694 0.18 -0.2
2,885,397 + SMc00694 0.18 -1.3
2,885,401 + SMc00694 0.20 -0.8
2,885,402 - SMc00694 0.20 +0.5
2,885,402 - SMc00694 0.20 +0.4
2,885,423 + SMc00694 0.27 -0.1
2,885,424 - SMc00694 0.27 +0.2
2,885,458 - SMc00694 0.39 -0.4
2,885,458 - SMc00694 0.39 +1.0
2,885,546 + SMc00694 0.68 -0.3
2,885,546 + SMc00694 0.68 +0.6
2,885,546 + SMc00694 0.68 -0.1
2,885,547 - SMc00694 0.68 +0.3
2,885,547 - SMc00694 0.68 -0.0
2,885,547 - SMc00694 0.68 +0.2
2,885,568 + SMc00694 0.75 -0.3
2,885,600 - SMc00694 0.85 +0.7
2,885,600 - SMc00694 0.85 -0.3
2,885,929 - -0.7
2,885,934 + +0.7
2,886,026 + +0.2
2,886,090 + -0.4
2,886,090 + +0.2
2,886,116 + +0.7

Or see this region's nucleotide sequence