Strain Fitness in Sinorhizobium meliloti 1021 around SMc00333

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00435 and SMc00332 are separated by 245 nucleotidesSMc00332 and SMc00333 are separated by 284 nucleotidesSMc00333 and SMc00334 overlap by 1 nucleotidesSMc00334 and SMc00335 are separated by 163 nucleotides SMc00435: SMc00435 - tRNA-Ala, at 285,983 to 286,058 SMc00435 SMc00332: SMc00332 - hypothetical protein, at 286,304 to 286,693 SMc00332 SMc00333: SMc00333 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 286,978 to 288,345 SMc00333 SMc00334: SMc00334 - cytidylate kinase, at 288,345 to 288,983 SMc00334 SMc00335: SMc00335 - 30S ribosomal protein S1, at 289,147 to 290,853 SMc00335 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -3 -2 -1 0 1at 286.179 kb on - strandat 288.421 kb on - strand, within SMc00334at 288.732 kb on + strand, within SMc00334at 288.922 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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286,179 - +0.2
288,421 - SMc00334 0.12 +0.7
288,732 + SMc00334 0.61 -1.8
288,922 + -2.9

Or see this region's nucleotide sequence