Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1493 and SMa1494 are separated by 86 nucleotides SMa1494 and SMa1495 are separated by 428 nucleotides SMa1495 and SMa1497 are separated by 201 nucleotides SMa1497 and SMa1500 are separated by 10 nucleotides
SMa1493: SMa1493 - LysR family transcriptional regulator, at 822,713 to 823,636
SMa1493
SMa1494: SMa1494 - hypothetical protein, at 823,723 to 824,163
SMa1494
SMa1495: SMa1495 - aminotransferase, at 824,592 to 825,704
SMa1495
SMa1497: SMa1497 - Gst12 glutathione-S-transferase, at 825,906 to 826,553
SMa1497
SMa1500: SMa1500 - oxidoreductase/oxygenase, at 826,564 to 828,330
SMa1500
Position (kb) 824
825
826 Strain fitness (log2 ratio) -1
0
1 at 823.634 kb on + strand at 823.634 kb on + strand at 823.634 kb on + strand at 823.635 kb on - strand at 823.635 kb on - strand at 823.635 kb on - strand at 823.635 kb on - strand at 823.642 kb on - strand at 823.846 kb on + strand, within SMa1494 at 823.893 kb on - strand, within SMa1494 at 823.963 kb on - strand, within SMa1494 at 824.049 kb on + strand, within SMa1494 at 824.085 kb on + strand, within SMa1494 at 824.086 kb on - strand, within SMa1494 at 824.107 kb on + strand, within SMa1494 at 824.108 kb on - strand, within SMa1494 at 824.109 kb on + strand, within SMa1494 at 824.110 kb on - strand, within SMa1494 at 824.145 kb on + strand at 824.215 kb on + strand at 824.216 kb on - strand at 824.229 kb on + strand at 824.229 kb on + strand at 824.230 kb on - strand at 824.230 kb on - strand at 824.281 kb on + strand at 824.282 kb on - strand at 824.309 kb on - strand at 824.762 kb on + strand, within SMa1495 at 824.762 kb on + strand, within SMa1495 at 824.763 kb on - strand, within SMa1495 at 824.783 kb on - strand, within SMa1495 at 824.808 kb on + strand, within SMa1495 at 824.917 kb on + strand, within SMa1495 at 825.290 kb on + strand, within SMa1495 at 825.290 kb on + strand, within SMa1495 at 825.291 kb on - strand, within SMa1495 at 825.291 kb on - strand, within SMa1495 at 825.327 kb on + strand, within SMa1495 at 825.328 kb on - strand, within SMa1495 at 825.357 kb on + strand, within SMa1495 at 825.454 kb on + strand, within SMa1495 at 825.455 kb on - strand, within SMa1495 at 825.873 kb on - strand at 826.155 kb on - strand, within SMa1497 at 826.155 kb on - strand, within SMa1497 at 826.193 kb on - strand, within SMa1497 at 826.193 kb on - strand, within SMa1497 at 826.322 kb on - strand, within SMa1497 at 826.322 kb on - strand, within SMa1497 at 826.322 kb on - strand, within SMa1497 at 826.336 kb on + strand, within SMa1497 at 826.337 kb on - strand, within SMa1497 at 826.475 kb on - strand, within SMa1497 at 826.534 kb on + strand at 826.541 kb on - strand at 826.652 kb on + strand at 826.652 kb on + strand at 826.653 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 823,634 + +0.6 823,634 + -0.6 823,634 + -0.6 823,635 - -1.5 823,635 - -0.5 823,635 - -0.2 823,635 - +0.8 823,642 - -0.5 823,846 + SMa1494 0.28 +0.1 823,893 - SMa1494 0.39 -0.4 823,963 - SMa1494 0.54 +0.0 824,049 + SMa1494 0.74 -0.6 824,085 + SMa1494 0.82 +0.3 824,086 - SMa1494 0.82 +0.3 824,107 + SMa1494 0.87 -0.3 824,108 - SMa1494 0.87 -0.1 824,109 + SMa1494 0.88 +0.2 824,110 - SMa1494 0.88 -0.2 824,145 + +0.5 824,215 + -0.0 824,216 - +0.0 824,229 + +0.7 824,229 + -0.4 824,230 - +0.7 824,230 - -0.1 824,281 + +0.2 824,282 - -0.4 824,309 - +0.1 824,762 + SMa1495 0.15 +0.2 824,762 + SMa1495 0.15 -0.3 824,763 - SMa1495 0.15 -0.7 824,783 - SMa1495 0.17 +1.1 824,808 + SMa1495 0.19 -0.1 824,917 + SMa1495 0.29 +0.9 825,290 + SMa1495 0.63 -0.2 825,290 + SMa1495 0.63 -1.0 825,291 - SMa1495 0.63 -0.3 825,291 - SMa1495 0.63 +0.4 825,327 + SMa1495 0.66 +0.8 825,328 - SMa1495 0.66 +0.3 825,357 + SMa1495 0.69 +0.0 825,454 + SMa1495 0.77 -0.4 825,455 - SMa1495 0.78 +0.2 825,873 - -1.0 826,155 - SMa1497 0.38 -0.2 826,155 - SMa1497 0.38 +0.7 826,193 - SMa1497 0.44 +0.3 826,193 - SMa1497 0.44 -0.1 826,322 - SMa1497 0.64 -0.2 826,322 - SMa1497 0.64 -0.0 826,322 - SMa1497 0.64 +0.2 826,336 + SMa1497 0.66 -0.6 826,337 - SMa1497 0.67 -0.8 826,475 - SMa1497 0.88 +0.2 826,534 + +0.5 826,541 - -0.2 826,652 + -0.3 826,652 + -0.9 826,653 - +0.0
Or see this region's nucleotide sequence