Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21156 and SM_b21157 are separated by 42 nucleotides SM_b21157 and SM_b21158 are separated by 20 nucleotides SM_b21158 and SM_b21159 are separated by 19 nucleotides SM_b21159 and SM_b21160 are separated by 24 nucleotides
SM_b21156: SM_b21156 - hypothetical protein, at 900,619 to 901,185
_b21156
SM_b21157: SM_b21157 - translation initiation inhibitor protein, at 901,228 to 901,617
_b21157
SM_b21158: SM_b21158 - transcriptional regulator, at 901,638 to 902,501
_b21158
SM_b21159: SM_b21159 - short-chain dehydrogenase, at 902,521 to 903,297
_b21159
SM_b21160: SM_b21160 - beta-N-acetylhexosaminidase, at 903,322 to 905,241
_b21160
Position (kb) 901
902
903 Strain fitness (log2 ratio) -2
-1
0
1 at 900.695 kb on + strand, within SM_b21156 at 900.699 kb on - strand, within SM_b21156 at 900.897 kb on - strand, within SM_b21156 at 900.995 kb on - strand, within SM_b21156 at 901.054 kb on + strand, within SM_b21156 at 901.055 kb on - strand, within SM_b21156 at 901.430 kb on - strand, within SM_b21157 at 901.504 kb on + strand, within SM_b21157 at 901.505 kb on - strand, within SM_b21157 at 901.513 kb on + strand, within SM_b21157 at 901.513 kb on + strand, within SM_b21157 at 901.547 kb on + strand, within SM_b21157 at 901.548 kb on - strand, within SM_b21157 at 901.548 kb on - strand, within SM_b21157 at 901.548 kb on - strand, within SM_b21157 at 901.597 kb on + strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.644 kb on - strand at 901.861 kb on - strand, within SM_b21158 at 901.861 kb on - strand, within SM_b21158 at 901.982 kb on - strand, within SM_b21158 at 902.028 kb on + strand, within SM_b21158 at 902.028 kb on + strand, within SM_b21158 at 902.028 kb on + strand, within SM_b21158 at 902.029 kb on - strand, within SM_b21158 at 902.171 kb on + strand, within SM_b21158 at 902.171 kb on + strand, within SM_b21158 at 902.261 kb on + strand, within SM_b21158 at 902.261 kb on + strand, within SM_b21158 at 902.337 kb on + strand, within SM_b21158 at 902.337 kb on + strand, within SM_b21158 at 902.338 kb on - strand, within SM_b21158 at 902.357 kb on + strand, within SM_b21158 at 902.358 kb on - strand, within SM_b21158 at 902.365 kb on - strand, within SM_b21158 at 902.962 kb on + strand, within SM_b21159 at 903.130 kb on + strand, within SM_b21159 at 903.292 kb on + strand at 903.442 kb on + strand at 903.442 kb on + strand at 903.443 kb on - strand at 903.443 kb on - strand at 903.443 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 900,695 + SM_b21156 0.13 +0.9 900,699 - SM_b21156 0.14 +0.2 900,897 - SM_b21156 0.49 +0.9 900,995 - SM_b21156 0.66 +0.0 901,054 + SM_b21156 0.77 +0.3 901,055 - SM_b21156 0.77 -0.2 901,430 - SM_b21157 0.52 -2.1 901,504 + SM_b21157 0.71 -0.0 901,505 - SM_b21157 0.71 +0.6 901,513 + SM_b21157 0.73 -1.0 901,513 + SM_b21157 0.73 -0.0 901,547 + SM_b21157 0.82 +0.9 901,548 - SM_b21157 0.82 +0.6 901,548 - SM_b21157 0.82 +0.7 901,548 - SM_b21157 0.82 -0.8 901,597 + +0.3 901,598 - +0.4 901,598 - +0.4 901,644 - +0.5 901,861 - SM_b21158 0.26 +1.5 901,861 - SM_b21158 0.26 -0.7 901,982 - SM_b21158 0.40 +0.4 902,028 + SM_b21158 0.45 +0.4 902,028 + SM_b21158 0.45 +0.3 902,028 + SM_b21158 0.45 +0.2 902,029 - SM_b21158 0.45 +0.9 902,171 + SM_b21158 0.62 +0.2 902,171 + SM_b21158 0.62 +0.1 902,261 + SM_b21158 0.72 +0.7 902,261 + SM_b21158 0.72 +0.3 902,337 + SM_b21158 0.81 -0.3 902,337 + SM_b21158 0.81 +0.6 902,338 - SM_b21158 0.81 -0.3 902,357 + SM_b21158 0.83 +0.7 902,358 - SM_b21158 0.83 +0.4 902,365 - SM_b21158 0.84 +1.3 902,962 + SM_b21159 0.57 -1.8 903,130 + SM_b21159 0.78 +0.0 903,292 + +0.3 903,442 + -0.0 903,442 + +0.0 903,443 - +0.2 903,443 - -0.3 903,443 - +0.6
Or see this region's nucleotide sequence