Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20875

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20873 and SM_b20874 are separated by 96 nucleotidesSM_b20874 and SM_b20875 overlap by 1 nucleotidesSM_b20875 and SM_b20876 are separated by 77 nucleotides SM_b20873: SM_b20873 - ureidoglycolate hydrolase, at 1,280,236 to 1,280,748 _b20873 SM_b20874: SM_b20874 - hypothetical protein, at 1,280,845 to 1,281,348 _b20874 SM_b20875: SM_b20875 - hypothetical protein, at 1,281,348 to 1,282,277 _b20875 SM_b20876: SM_b20876 - hypothetical protein, at 1,282,355 to 1,283,152 _b20876 Position (kb) 1281 1282 1283Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1280.389 kb on + strand, within SM_b20873at 1280.391 kb on - strand, within SM_b20873at 1280.464 kb on + strand, within SM_b20873at 1280.552 kb on - strand, within SM_b20873at 1280.552 kb on - strand, within SM_b20873at 1280.739 kb on + strandat 1280.739 kb on + strandat 1280.739 kb on + strandat 1280.740 kb on - strandat 1280.740 kb on - strandat 1280.740 kb on - strandat 1281.032 kb on + strand, within SM_b20874at 1281.032 kb on + strand, within SM_b20874at 1281.032 kb on + strand, within SM_b20874at 1281.033 kb on - strand, within SM_b20874at 1281.272 kb on + strand, within SM_b20874at 1281.273 kb on - strand, within SM_b20874at 1281.273 kb on - strand, within SM_b20874at 1281.439 kb on + strandat 1281.439 kb on + strandat 1281.439 kb on + strandat 1281.545 kb on - strand, within SM_b20875at 1281.545 kb on - strandat 1281.545 kb on - strand, within SM_b20875at 1281.545 kb on - strand, within SM_b20875at 1281.571 kb on + strand, within SM_b20875at 1281.571 kb on + strand, within SM_b20875at 1281.571 kb on + strand, within SM_b20875at 1281.641 kb on + strand, within SM_b20875at 1281.641 kb on + strand, within SM_b20875at 1281.644 kb on - strand, within SM_b20875at 1281.653 kb on + strand, within SM_b20875at 1281.654 kb on - strand, within SM_b20875at 1281.784 kb on + strand, within SM_b20875at 1281.784 kb on + strand, within SM_b20875at 1281.784 kb on + strand, within SM_b20875at 1281.785 kb on - strand, within SM_b20875at 1281.785 kb on - strand, within SM_b20875at 1281.857 kb on + strand, within SM_b20875at 1281.877 kb on + strand, within SM_b20875at 1281.878 kb on - strand, within SM_b20875at 1281.878 kb on - strand, within SM_b20875at 1281.976 kb on + strand, within SM_b20875at 1281.977 kb on - strand, within SM_b20875at 1281.977 kb on - strand, within SM_b20875at 1282.046 kb on - strand, within SM_b20875at 1282.051 kb on + strand, within SM_b20875at 1282.065 kb on - strand, within SM_b20875at 1282.171 kb on + strand, within SM_b20875at 1282.172 kb on - strand, within SM_b20875at 1282.308 kb on - strandat 1283.007 kb on + strand, within SM_b20876at 1283.007 kb on + strandat 1283.007 kb on + strand, within SM_b20876at 1283.008 kb on - strand, within SM_b20876at 1283.145 kb on + strandat 1283.185 kb on + strandat 1283.186 kb on - strandat 1283.238 kb on + strandat 1283.267 kb on + strandat 1283.268 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,280,389 + SM_b20873 0.30 +0.2
1,280,391 - SM_b20873 0.30 +1.1
1,280,464 + SM_b20873 0.44 -1.9
1,280,552 - SM_b20873 0.62 +0.3
1,280,552 - SM_b20873 0.62 +0.1
1,280,739 + -0.5
1,280,739 + -5.4
1,280,739 + -0.0
1,280,740 - -0.1
1,280,740 - -0.2
1,280,740 - +0.6
1,281,032 + SM_b20874 0.37 -2.7
1,281,032 + SM_b20874 0.37 +0.5
1,281,032 + SM_b20874 0.37 -0.2
1,281,033 - SM_b20874 0.37 -0.1
1,281,272 + SM_b20874 0.85 +0.1
1,281,273 - SM_b20874 0.85 +0.6
1,281,273 - SM_b20874 0.85 +0.1
1,281,439 + -0.2
1,281,439 + -2.3
1,281,439 + +0.1
1,281,545 - SM_b20875 0.21 +1.6
1,281,545 - -1.3
1,281,545 - SM_b20875 0.21 -0.1
1,281,545 - SM_b20875 0.21 +0.5
1,281,571 + SM_b20875 0.24 +1.0
1,281,571 + SM_b20875 0.24 +1.0
1,281,571 + SM_b20875 0.24 -0.3
1,281,641 + SM_b20875 0.32 -0.5
1,281,641 + SM_b20875 0.32 -0.4
1,281,644 - SM_b20875 0.32 +0.2
1,281,653 + SM_b20875 0.33 -0.5
1,281,654 - SM_b20875 0.33 +0.6
1,281,784 + SM_b20875 0.47 -0.2
1,281,784 + SM_b20875 0.47 -0.2
1,281,784 + SM_b20875 0.47 -1.1
1,281,785 - SM_b20875 0.47 +0.3
1,281,785 - SM_b20875 0.47 +0.6
1,281,857 + SM_b20875 0.55 +2.1
1,281,877 + SM_b20875 0.57 +0.2
1,281,878 - SM_b20875 0.57 -1.0
1,281,878 - SM_b20875 0.57 -0.4
1,281,976 + SM_b20875 0.68 -0.1
1,281,977 - SM_b20875 0.68 +0.2
1,281,977 - SM_b20875 0.68 +0.3
1,282,046 - SM_b20875 0.75 +0.1
1,282,051 + SM_b20875 0.76 -0.3
1,282,065 - SM_b20875 0.77 +1.4
1,282,171 + SM_b20875 0.88 +0.2
1,282,172 - SM_b20875 0.89 +2.0
1,282,308 - -1.0
1,283,007 + SM_b20876 0.82 -0.1
1,283,007 + +1.1
1,283,007 + SM_b20876 0.82 +0.3
1,283,008 - SM_b20876 0.82 +0.0
1,283,145 + -0.0
1,283,185 + -0.7
1,283,186 - +0.1
1,283,238 + -1.2
1,283,267 + -0.1
1,283,268 - +2.1

Or see this region's nucleotide sequence