Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20704

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20702 and SM_b20703 are separated by 51 nucleotidesSM_b20703 and SM_b20704 are separated by 276 nucleotidesSM_b20704 and SM_b20705 are separated by 314 nucleotides SM_b20702: SM_b20702 - regulatory protein, at 1,502,959 to 1,504,623 _b20702 SM_b20703: SM_b20703 - hypothetical protein, at 1,504,675 to 1,505,184 _b20703 SM_b20704: SM_b20704 - glycogen synthase, at 1,505,461 to 1,506,921 _b20704 SM_b20705: SM_b20705 - hypothetical protein, at 1,507,236 to 1,508,147 _b20705 Position (kb) 1505 1506 1507Strain fitness (log2 ratio) -1 0 1 2 3at 1504.645 kb on + strandat 1504.676 kb on + strandat 1504.676 kb on + strandat 1504.677 kb on - strandat 1504.685 kb on + strandat 1504.685 kb on + strandat 1504.685 kb on + strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1504.686 kb on - strandat 1505.043 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.078 kb on + strand, within SM_b20703at 1505.079 kb on - strand, within SM_b20703at 1505.155 kb on + strandat 1505.156 kb on - strandat 1505.156 kb on - strandat 1505.214 kb on - strandat 1505.265 kb on + strandat 1505.352 kb on - strandat 1505.468 kb on + strandat 1505.468 kb on + strandat 1505.468 kb on + strandat 1505.525 kb on + strandat 1505.590 kb on + strandat 1505.590 kb on + strandat 1505.590 kb on + strandat 1505.725 kb on + strand, within SM_b20704at 1505.725 kb on + strand, within SM_b20704at 1505.725 kb on + strand, within SM_b20704at 1505.726 kb on - strand, within SM_b20704at 1505.726 kb on - strand, within SM_b20704at 1505.746 kb on + strand, within SM_b20704at 1505.746 kb on + strand, within SM_b20704at 1505.747 kb on - strand, within SM_b20704at 1505.770 kb on + strand, within SM_b20704at 1505.899 kb on + strand, within SM_b20704at 1505.900 kb on - strand, within SM_b20704at 1505.909 kb on - strand, within SM_b20704at 1505.909 kb on - strand, within SM_b20704at 1505.983 kb on + strand, within SM_b20704at 1505.984 kb on - strand, within SM_b20704at 1506.016 kb on + strand, within SM_b20704at 1506.109 kb on + strand, within SM_b20704at 1506.110 kb on - strand, within SM_b20704at 1506.204 kb on - strand, within SM_b20704at 1506.215 kb on + strand, within SM_b20704at 1506.215 kb on + strand, within SM_b20704at 1506.254 kb on - strand, within SM_b20704at 1506.254 kb on - strand, within SM_b20704at 1506.509 kb on + strand, within SM_b20704at 1506.509 kb on + strand, within SM_b20704at 1506.509 kb on + strand, within SM_b20704at 1506.509 kb on + strand, within SM_b20704at 1506.509 kb on + strand, within SM_b20704at 1506.510 kb on - strand, within SM_b20704at 1506.611 kb on - strand, within SM_b20704at 1506.617 kb on + strand, within SM_b20704at 1506.719 kb on + strand, within SM_b20704at 1506.719 kb on + strand, within SM_b20704at 1506.719 kb on + strand, within SM_b20704at 1506.720 kb on - strand, within SM_b20704at 1506.749 kb on + strand, within SM_b20704at 1506.749 kb on + strand, within SM_b20704at 1506.750 kb on - strand, within SM_b20704at 1506.862 kb on + strandat 1507.097 kb on + strandat 1507.097 kb on + strandat 1507.098 kb on - strandat 1507.098 kb on - strandat 1507.305 kb on - strandat 1507.368 kb on + strand, within SM_b20705at 1507.391 kb on + strand, within SM_b20705at 1507.439 kb on - strand, within SM_b20705at 1507.543 kb on - strand, within SM_b20705at 1507.569 kb on + strand, within SM_b20705at 1507.569 kb on + strand, within SM_b20705at 1507.570 kb on - strand, within SM_b20705at 1507.590 kb on + strand, within SM_b20705at 1507.590 kb on + strand, within SM_b20705

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,504,645 + +0.2
1,504,676 + +0.6
1,504,676 + +1.0
1,504,677 - -0.5
1,504,685 + -0.4
1,504,685 + -0.2
1,504,685 + +0.2
1,504,686 - +0.7
1,504,686 - -0.1
1,504,686 - -0.5
1,504,686 - -1.4
1,504,686 - +1.8
1,505,043 + SM_b20703 0.72 +1.4
1,505,078 + SM_b20703 0.79 +0.4
1,505,078 + SM_b20703 0.79 -0.1
1,505,078 + SM_b20703 0.79 -0.8
1,505,079 - SM_b20703 0.79 -1.1
1,505,155 + +0.2
1,505,156 - +0.9
1,505,156 - +0.1
1,505,214 - -0.5
1,505,265 + -0.4
1,505,352 - -0.2
1,505,468 + +0.1
1,505,468 + -0.4
1,505,468 + +0.1
1,505,525 + +0.8
1,505,590 + +1.8
1,505,590 + +1.2
1,505,590 + +0.2
1,505,725 + SM_b20704 0.18 +0.6
1,505,725 + SM_b20704 0.18 +0.7
1,505,725 + SM_b20704 0.18 +0.2
1,505,726 - SM_b20704 0.18 +1.1
1,505,726 - SM_b20704 0.18 -0.9
1,505,746 + SM_b20704 0.20 +0.5
1,505,746 + SM_b20704 0.20 -0.9
1,505,747 - SM_b20704 0.20 -0.3
1,505,770 + SM_b20704 0.21 -0.1
1,505,899 + SM_b20704 0.30 -1.0
1,505,900 - SM_b20704 0.30 +0.1
1,505,909 - SM_b20704 0.31 +0.7
1,505,909 - SM_b20704 0.31 +0.7
1,505,983 + SM_b20704 0.36 +0.0
1,505,984 - SM_b20704 0.36 -1.7
1,506,016 + SM_b20704 0.38 +0.4
1,506,109 + SM_b20704 0.44 -0.5
1,506,110 - SM_b20704 0.44 -0.2
1,506,204 - SM_b20704 0.51 -0.0
1,506,215 + SM_b20704 0.52 +0.3
1,506,215 + SM_b20704 0.52 -0.1
1,506,254 - SM_b20704 0.54 +0.3
1,506,254 - SM_b20704 0.54 +0.6
1,506,509 + SM_b20704 0.72 +0.1
1,506,509 + SM_b20704 0.72 -0.0
1,506,509 + SM_b20704 0.72 +0.8
1,506,509 + SM_b20704 0.72 -0.2
1,506,509 + SM_b20704 0.72 -0.5
1,506,510 - SM_b20704 0.72 +0.3
1,506,611 - SM_b20704 0.79 +1.6
1,506,617 + SM_b20704 0.79 +0.6
1,506,719 + SM_b20704 0.86 +0.8
1,506,719 + SM_b20704 0.86 -0.7
1,506,719 + SM_b20704 0.86 +1.3
1,506,720 - SM_b20704 0.86 +0.5
1,506,749 + SM_b20704 0.88 +0.8
1,506,749 + SM_b20704 0.88 +0.5
1,506,750 - SM_b20704 0.88 +0.9
1,506,862 + +0.1
1,507,097 + +0.1
1,507,097 + -0.6
1,507,098 - -0.5
1,507,098 - -1.1
1,507,305 - -0.2
1,507,368 + SM_b20705 0.14 +2.8
1,507,391 + SM_b20705 0.17 -0.4
1,507,439 - SM_b20705 0.22 -1.0
1,507,543 - SM_b20705 0.34 +0.6
1,507,569 + SM_b20705 0.37 -0.6
1,507,569 + SM_b20705 0.37 +0.6
1,507,570 - SM_b20705 0.37 -0.9
1,507,590 + SM_b20705 0.39 +0.4
1,507,590 + SM_b20705 0.39 -0.5

Or see this region's nucleotide sequence