Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20295 and SM_b20296 are separated by 55 nucleotides SM_b20296 and SM_b20297 are separated by 0 nucleotides
SM_b20295: SM_b20295 - ABC transporter substrate-binding protein, at 301,924 to 302,895
_b20295
SM_b20296: SM_b20296 - permease, at 302,951 to 303,469
_b20296
SM_b20297: SM_b20297 - permease, at 303,470 to 304,750
_b20297
Position (kb) 302
303
304 Strain fitness (log2 ratio) -2
-1
0
1 at 302.022 kb on + strand, within SM_b20295 at 302.130 kb on + strand, within SM_b20295 at 302.242 kb on + strand, within SM_b20295 at 302.243 kb on - strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.451 kb on + strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.452 kb on - strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.506 kb on + strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.507 kb on - strand, within SM_b20295 at 302.833 kb on + strand at 303.176 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.267 kb on - strand, within SM_b20296 at 303.269 kb on + strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.270 kb on - strand, within SM_b20296 at 303.461 kb on + strand at 303.462 kb on - strand at 303.462 kb on - strand at 303.467 kb on + strand at 303.468 kb on - strand at 303.554 kb on + strand at 303.555 kb on - strand at 303.725 kb on - strand, within SM_b20297 at 303.725 kb on - strand, within SM_b20297 at 303.897 kb on + strand, within SM_b20297 at 303.898 kb on - strand, within SM_b20297 at 303.935 kb on + strand, within SM_b20297 at 303.952 kb on + strand, within SM_b20297 at 303.953 kb on - strand, within SM_b20297 at 304.028 kb on + strand, within SM_b20297 at 304.029 kb on - strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.052 kb on + strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.053 kb on - strand, within SM_b20297 at 304.283 kb on - strand, within SM_b20297 at 304.350 kb on + strand, within SM_b20297 at 304.351 kb on - strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.382 kb on + strand, within SM_b20297 at 304.383 kb on - strand, within SM_b20297
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 302,022 + SM_b20295 0.10 -0.4 302,130 + SM_b20295 0.21 -0.2 302,242 + SM_b20295 0.33 +0.3 302,243 - SM_b20295 0.33 +0.0 302,451 + SM_b20295 0.54 -1.9 302,451 + SM_b20295 0.54 -0.3 302,452 - SM_b20295 0.54 -0.4 302,452 - SM_b20295 0.54 -1.2 302,452 - SM_b20295 0.54 +0.6 302,506 + SM_b20295 0.60 -0.3 302,506 + SM_b20295 0.60 +0.1 302,506 + SM_b20295 0.60 -0.4 302,507 - SM_b20295 0.60 +0.5 302,507 - SM_b20295 0.60 -0.7 302,833 + +0.0 303,176 - SM_b20296 0.43 -0.8 303,267 - SM_b20296 0.61 +1.1 303,267 - SM_b20296 0.61 +0.2 303,269 + SM_b20296 0.61 +1.3 303,270 - SM_b20296 0.61 +0.7 303,270 - SM_b20296 0.61 -0.6 303,461 + +0.1 303,462 - +0.4 303,462 - -1.3 303,467 + +0.0 303,468 - -0.0 303,554 + -0.6 303,555 - +0.6 303,725 - SM_b20297 0.20 -0.0 303,725 - SM_b20297 0.20 +0.1 303,897 + SM_b20297 0.33 +0.6 303,898 - SM_b20297 0.33 +0.2 303,935 + SM_b20297 0.36 -0.8 303,952 + SM_b20297 0.38 -0.1 303,953 - SM_b20297 0.38 -0.0 304,028 + SM_b20297 0.44 -0.3 304,029 - SM_b20297 0.44 -2.5 304,052 + SM_b20297 0.45 -0.2 304,052 + SM_b20297 0.45 -0.8 304,052 + SM_b20297 0.45 +0.1 304,052 + SM_b20297 0.45 +0.2 304,052 + SM_b20297 0.45 +0.1 304,053 - SM_b20297 0.46 +0.5 304,053 - SM_b20297 0.46 -0.5 304,053 - SM_b20297 0.46 +0.3 304,283 - SM_b20297 0.63 -0.5 304,350 + SM_b20297 0.69 -0.1 304,351 - SM_b20297 0.69 -0.1 304,382 + SM_b20297 0.71 +0.9 304,382 + SM_b20297 0.71 -0.1 304,382 + SM_b20297 0.71 +0.0 304,383 - SM_b20297 0.71 -0.2
Or see this region's nucleotide sequence