Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_953 and Pf6N2E2_954 are separated by 125 nucleotides Pf6N2E2_954 and Pf6N2E2_955 are separated by 17 nucleotides Pf6N2E2_955 and Pf6N2E2_956 are separated by 7 nucleotides Pf6N2E2_956 and Pf6N2E2_957 are separated by 17 nucleotides Pf6N2E2_957 and Pf6N2E2_958 are separated by 236 nucleotides
Pf6N2E2_953 - FIG00958851: hypothetical protein, at 1,125,205 to 1,125,888
_953
Pf6N2E2_954 - Possible exported protein, at 1,126,014 to 1,126,634
_954
Pf6N2E2_955 - FIG00953508: hypothetical protein, at 1,126,652 to 1,127,065
_955
Pf6N2E2_956 - FIG01210404: hypothetical protein, at 1,127,073 to 1,127,444
_956
Pf6N2E2_957 - hypothetical protein, at 1,127,462 to 1,127,578
_957
Pf6N2E2_958 - hypothetical protein, at 1,127,815 to 1,127,934
_958
Position (kb) 1126
1127
1128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1125.800 kb on + strand, within Pf6N2E2_953 at 1125.801 kb on - strand, within Pf6N2E2_953 at 1125.925 kb on + strand at 1126.003 kb on - strand at 1126.165 kb on + strand, within Pf6N2E2_954 at 1126.166 kb on - strand, within Pf6N2E2_954 at 1126.168 kb on + strand, within Pf6N2E2_954 at 1126.169 kb on - strand, within Pf6N2E2_954 at 1126.169 kb on - strand, within Pf6N2E2_954 at 1126.169 kb on - strand, within Pf6N2E2_954 at 1126.321 kb on + strand, within Pf6N2E2_954 at 1126.375 kb on + strand, within Pf6N2E2_954 at 1126.375 kb on + strand, within Pf6N2E2_954 at 1126.376 kb on - strand, within Pf6N2E2_954 at 1126.376 kb on - strand, within Pf6N2E2_954 at 1126.376 kb on - strand, within Pf6N2E2_954 at 1126.438 kb on + strand, within Pf6N2E2_954 at 1126.438 kb on + strand, within Pf6N2E2_954 at 1126.439 kb on - strand, within Pf6N2E2_954 at 1126.439 kb on - strand, within Pf6N2E2_954 at 1126.439 kb on - strand, within Pf6N2E2_954 at 1126.439 kb on - strand, within Pf6N2E2_954 at 1126.453 kb on + strand, within Pf6N2E2_954 at 1126.454 kb on - strand, within Pf6N2E2_954 at 1126.454 kb on - strand, within Pf6N2E2_954 at 1126.454 kb on - strand, within Pf6N2E2_954 at 1126.454 kb on - strand, within Pf6N2E2_954 at 1126.472 kb on + strand, within Pf6N2E2_954 at 1126.515 kb on + strand, within Pf6N2E2_954 at 1126.515 kb on + strand, within Pf6N2E2_954 at 1126.515 kb on + strand, within Pf6N2E2_954 at 1126.515 kb on + strand, within Pf6N2E2_954 at 1126.576 kb on - strand at 1126.841 kb on + strand, within Pf6N2E2_955 at 1126.841 kb on + strand, within Pf6N2E2_955 at 1126.842 kb on - strand, within Pf6N2E2_955 at 1126.842 kb on - strand, within Pf6N2E2_955 at 1127.168 kb on + strand, within Pf6N2E2_956 at 1127.169 kb on - strand, within Pf6N2E2_956 at 1127.191 kb on + strand, within Pf6N2E2_956 at 1127.191 kb on + strand, within Pf6N2E2_956 at 1127.192 kb on - strand, within Pf6N2E2_956 at 1127.269 kb on + strand, within Pf6N2E2_956 at 1127.275 kb on + strand, within Pf6N2E2_956 at 1127.276 kb on - strand, within Pf6N2E2_956 at 1127.276 kb on - strand, within Pf6N2E2_956 at 1127.603 kb on + strand at 1127.812 kb on - strand at 1127.812 kb on - strand at 1127.877 kb on + strand, within Pf6N2E2_958 at 1127.878 kb on - strand, within Pf6N2E2_958 at 1127.878 kb on - strand, within Pf6N2E2_958 at 1127.878 kb on - strand, within Pf6N2E2_958 at 1127.937 kb on + strand at 1127.938 kb on - strand at 1128.049 kb on - strand at 1128.052 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 1,125,800 + Pf6N2E2_953 0.87 +0.1 1,125,801 - Pf6N2E2_953 0.87 -0.2 1,125,925 + +1.1 1,126,003 - +1.5 1,126,165 + Pf6N2E2_954 0.24 +2.3 1,126,166 - Pf6N2E2_954 0.24 -0.8 1,126,168 + Pf6N2E2_954 0.25 +0.1 1,126,169 - Pf6N2E2_954 0.25 -0.1 1,126,169 - Pf6N2E2_954 0.25 -0.3 1,126,169 - Pf6N2E2_954 0.25 -0.7 1,126,321 + Pf6N2E2_954 0.49 +0.4 1,126,375 + Pf6N2E2_954 0.58 -0.6 1,126,375 + Pf6N2E2_954 0.58 +0.5 1,126,376 - Pf6N2E2_954 0.58 +0.1 1,126,376 - Pf6N2E2_954 0.58 +1.3 1,126,376 - Pf6N2E2_954 0.58 +0.2 1,126,438 + Pf6N2E2_954 0.68 -0.6 1,126,438 + Pf6N2E2_954 0.68 -0.6 1,126,439 - Pf6N2E2_954 0.68 -0.3 1,126,439 - Pf6N2E2_954 0.68 +0.7 1,126,439 - Pf6N2E2_954 0.68 +0.7 1,126,439 - Pf6N2E2_954 0.68 -0.6 1,126,453 + Pf6N2E2_954 0.71 +0.9 1,126,454 - Pf6N2E2_954 0.71 -0.6 1,126,454 - Pf6N2E2_954 0.71 +0.0 1,126,454 - Pf6N2E2_954 0.71 +0.1 1,126,454 - Pf6N2E2_954 0.71 -0.7 1,126,472 + Pf6N2E2_954 0.74 -0.3 1,126,515 + Pf6N2E2_954 0.81 -0.9 1,126,515 + Pf6N2E2_954 0.81 -0.4 1,126,515 + Pf6N2E2_954 0.81 +0.4 1,126,515 + Pf6N2E2_954 0.81 -1.5 1,126,576 - +0.6 1,126,841 + Pf6N2E2_955 0.46 +0.7 1,126,841 + Pf6N2E2_955 0.46 -0.4 1,126,842 - Pf6N2E2_955 0.46 -0.7 1,126,842 - Pf6N2E2_955 0.46 -1.3 1,127,168 + Pf6N2E2_956 0.26 +0.9 1,127,169 - Pf6N2E2_956 0.26 -1.5 1,127,191 + Pf6N2E2_956 0.32 +0.9 1,127,191 + Pf6N2E2_956 0.32 -0.3 1,127,192 - Pf6N2E2_956 0.32 -0.9 1,127,269 + Pf6N2E2_956 0.53 -2.2 1,127,275 + Pf6N2E2_956 0.54 +0.9 1,127,276 - Pf6N2E2_956 0.55 +0.6 1,127,276 - Pf6N2E2_956 0.55 +0.6 1,127,603 + +1.1 1,127,812 - +0.9 1,127,812 - +0.2 1,127,877 + Pf6N2E2_958 0.52 -0.2 1,127,878 - Pf6N2E2_958 0.53 -0.1 1,127,878 - Pf6N2E2_958 0.53 +0.6 1,127,878 - Pf6N2E2_958 0.53 +0.5 1,127,937 + -0.1 1,127,938 - +0.1 1,128,049 - +1.1 1,128,052 - -0.2
Or see this region's nucleotide sequence