Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_577 and Pf6N2E2_578 are separated by 61 nucleotides Pf6N2E2_578 and Pf6N2E2_579 overlap by 4 nucleotides Pf6N2E2_579 and Pf6N2E2_580 are separated by 787 nucleotides
Pf6N2E2_577 - Mobile element protein, at 652,073 to 653,641
_577
Pf6N2E2_578 - Mobile element protein, at 653,703 to 654,038
_578
Pf6N2E2_579 - FIG00962753: hypothetical protein, at 654,035 to 654,229
_579
Pf6N2E2_580 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 655,017 to 655,811
_580
Position (kb) 654
655 Strain fitness (log2 ratio) -1
0
1
2 at 653.046 kb on - strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.172 kb on + strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.173 kb on - strand, within Pf6N2E2_577 at 653.259 kb on - strand, within Pf6N2E2_577 at 653.459 kb on + strand at 653.460 kb on - strand, within Pf6N2E2_577 at 653.573 kb on + strand at 653.574 kb on - strand at 653.588 kb on + strand at 653.611 kb on + strand at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.920 kb on + strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 653.921 kb on - strand, within Pf6N2E2_578 at 654.053 kb on + strand at 654.054 kb on - strand at 654.178 kb on + strand, within Pf6N2E2_579 at 654.179 kb on - strand, within Pf6N2E2_579 at 654.381 kb on - strand at 654.388 kb on + strand at 654.388 kb on + strand at 654.447 kb on + strand at 654.468 kb on + strand at 654.469 kb on - strand at 654.469 kb on - strand at 654.865 kb on + strand at 654.866 kb on - strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.873 kb on + strand at 654.925 kb on + strand at 654.925 kb on + strand at 654.926 kb on - strand at 654.936 kb on - strand at 654.936 kb on - strand at 654.936 kb on - strand at 655.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 653,046 - Pf6N2E2_577 0.62 +0.7 653,172 + Pf6N2E2_577 0.70 +0.9 653,172 + Pf6N2E2_577 0.70 +1.6 653,173 - Pf6N2E2_577 0.70 +0.9 653,173 - Pf6N2E2_577 0.70 +0.9 653,173 - Pf6N2E2_577 0.70 -1.3 653,259 - Pf6N2E2_577 0.76 +0.5 653,459 + +1.9 653,460 - Pf6N2E2_577 0.88 +0.8 653,573 + +0.2 653,574 - +0.6 653,588 + -0.5 653,611 + -0.1 653,920 + Pf6N2E2_578 0.65 -0.5 653,920 + Pf6N2E2_578 0.65 -0.2 653,920 + Pf6N2E2_578 0.65 -0.3 653,920 + Pf6N2E2_578 0.65 +0.7 653,920 + Pf6N2E2_578 0.65 -0.5 653,920 + Pf6N2E2_578 0.65 +0.2 653,921 - Pf6N2E2_578 0.65 -0.4 653,921 - Pf6N2E2_578 0.65 -0.4 654,053 + -0.3 654,054 - +0.2 654,178 + Pf6N2E2_579 0.73 +0.1 654,179 - Pf6N2E2_579 0.74 -0.8 654,381 - -0.5 654,388 + -0.3 654,388 + -1.5 654,447 + +0.1 654,468 + -0.6 654,469 - +1.2 654,469 - +0.3 654,865 + -0.8 654,866 - +0.3 654,873 + +0.1 654,873 + +0.3 654,873 + +0.4 654,873 + +0.3 654,873 + +0.5 654,873 + +0.2 654,873 + +0.7 654,925 + -0.6 654,925 + +0.1 654,926 - +0.1 654,936 - +0.7 654,936 - -0.0 654,936 - +0.7 655,018 + +0.4
Or see this region's nucleotide sequence