Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6043

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_6041 and Pf1N1B4_6042 are separated by 194 nucleotidesPf1N1B4_6042 and Pf1N1B4_6043 are separated by 113 nucleotidesPf1N1B4_6043 and Pf1N1B4_6044 are separated by 230 nucleotidesPf1N1B4_6044 and Pf1N1B4_6045 are separated by 243 nucleotides Pf1N1B4_6041 - Carbon storage regulator, at 504,393 to 504,587 _6041 Pf1N1B4_6042 - Probable transmembrane protein, at 504,782 to 505,237 _6042 Pf1N1B4_6043 - membrane protein, putative, at 505,351 to 506,565 _6043 Pf1N1B4_6044 - hypothetical protein, at 506,796 to 507,065 _6044 Pf1N1B4_6045 - CigR (Putative inner membrane protein), at 507,309 to 507,545 _6045 Position (kb) 505 506 507Strain fitness (log2 ratio) -2 -1 0 1 2at 504.369 kb on + strandat 504.370 kb on - strandat 504.400 kb on + strandat 504.427 kb on + strand, within Pf1N1B4_6041at 504.428 kb on - strand, within Pf1N1B4_6041at 504.446 kb on + strand, within Pf1N1B4_6041at 504.447 kb on - strand, within Pf1N1B4_6041at 504.711 kb on - strandat 504.854 kb on - strand, within Pf1N1B4_6042at 504.872 kb on + strandat 504.873 kb on - strand, within Pf1N1B4_6042at 504.873 kb on - strand, within Pf1N1B4_6042at 504.873 kb on - strand, within Pf1N1B4_6042at 505.015 kb on - strand, within Pf1N1B4_6042at 505.015 kb on - strand, within Pf1N1B4_6042at 505.018 kb on - strand, within Pf1N1B4_6042at 505.018 kb on - strand, within Pf1N1B4_6042at 505.018 kb on - strand, within Pf1N1B4_6042at 505.152 kb on - strand, within Pf1N1B4_6042at 505.152 kb on - strand, within Pf1N1B4_6042at 505.244 kb on - strandat 505.244 kb on - strandat 505.244 kb on - strandat 505.244 kb on - strandat 505.244 kb on - strandat 505.244 kb on - strandat 505.251 kb on - strandat 505.273 kb on + strandat 505.273 kb on + strandat 505.274 kb on - strandat 505.274 kb on - strandat 505.274 kb on - strandat 505.274 kb on - strandat 505.278 kb on + strandat 505.281 kb on + strandat 505.281 kb on + strandat 505.282 kb on - strandat 505.282 kb on - strandat 505.282 kb on - strandat 505.282 kb on - strandat 505.282 kb on - strandat 505.282 kb on - strandat 505.297 kb on - strandat 505.297 kb on - strandat 505.297 kb on - strandat 505.297 kb on - strandat 505.363 kb on + strandat 505.364 kb on - strandat 505.364 kb on - strandat 505.378 kb on - strandat 505.378 kb on - strandat 505.378 kb on - strandat 505.378 kb on - strandat 505.580 kb on - strand, within Pf1N1B4_6043at 505.616 kb on - strand, within Pf1N1B4_6043at 505.637 kb on - strand, within Pf1N1B4_6043at 505.637 kb on - strand, within Pf1N1B4_6043at 505.714 kb on + strandat 505.729 kb on + strand, within Pf1N1B4_6043at 505.730 kb on - strand, within Pf1N1B4_6043at 505.730 kb on - strand, within Pf1N1B4_6043at 505.735 kb on + strand, within Pf1N1B4_6043at 505.736 kb on - strand, within Pf1N1B4_6043at 505.736 kb on - strandat 505.753 kb on + strand, within Pf1N1B4_6043at 506.083 kb on + strand, within Pf1N1B4_6043at 506.084 kb on - strand, within Pf1N1B4_6043at 506.084 kb on - strand, within Pf1N1B4_6043at 506.104 kb on + strand, within Pf1N1B4_6043at 506.104 kb on + strand, within Pf1N1B4_6043at 506.104 kb on + strand, within Pf1N1B4_6043at 506.105 kb on - strand, within Pf1N1B4_6043at 506.105 kb on - strand, within Pf1N1B4_6043at 506.186 kb on + strandat 506.206 kb on - strand, within Pf1N1B4_6043at 506.206 kb on - strand, within Pf1N1B4_6043at 506.206 kb on - strand, within Pf1N1B4_6043at 506.206 kb on - strand, within Pf1N1B4_6043at 506.309 kb on + strand, within Pf1N1B4_6043at 506.309 kb on + strand, within Pf1N1B4_6043at 506.309 kb on + strand, within Pf1N1B4_6043at 506.310 kb on - strandat 506.310 kb on - strand, within Pf1N1B4_6043at 506.310 kb on - strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.311 kb on + strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strandat 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.312 kb on - strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.315 kb on + strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.316 kb on - strand, within Pf1N1B4_6043at 506.563 kb on + strandat 506.563 kb on + strandat 506.563 kb on + strandat 506.563 kb on + strandat 506.563 kb on + strandat 506.564 kb on - strandat 506.666 kb on + strandat 506.667 kb on - strandat 507.153 kb on + strandat 507.165 kb on + strandat 507.165 kb on + strandat 507.165 kb on + strandat 507.166 kb on - strandat 507.166 kb on - strandat 507.261 kb on + strandat 507.261 kb on + strandat 507.261 kb on + strandat 507.262 kb on - strandat 507.262 kb on - strandat 507.272 kb on - strandat 507.272 kb on - strandat 507.337 kb on + strand, within Pf1N1B4_6045at 507.338 kb on - strand, within Pf1N1B4_6045at 507.406 kb on + strand, within Pf1N1B4_6045at 507.407 kb on - strandat 507.407 kb on - strand, within Pf1N1B4_6045at 507.407 kb on - strand, within Pf1N1B4_6045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
504,369 + +0.1
504,370 - -0.5
504,400 + -0.6
504,427 + Pf1N1B4_6041 0.17 +0.4
504,428 - Pf1N1B4_6041 0.18 -1.0
504,446 + Pf1N1B4_6041 0.27 -1.2
504,447 - Pf1N1B4_6041 0.28 +1.0
504,711 - +0.1
504,854 - Pf1N1B4_6042 0.16 -0.6
504,872 + -1.0
504,873 - Pf1N1B4_6042 0.20 -0.2
504,873 - Pf1N1B4_6042 0.20 +1.0
504,873 - Pf1N1B4_6042 0.20 -0.8
505,015 - Pf1N1B4_6042 0.51 -0.8
505,015 - Pf1N1B4_6042 0.51 +0.3
505,018 - Pf1N1B4_6042 0.52 +0.4
505,018 - Pf1N1B4_6042 0.52 -1.2
505,018 - Pf1N1B4_6042 0.52 +0.5
505,152 - Pf1N1B4_6042 0.81 -0.4
505,152 - Pf1N1B4_6042 0.81 -1.0
505,244 - -0.0
505,244 - -0.0
505,244 - -0.0
505,244 - -0.0
505,244 - -1.5
505,244 - +1.8
505,251 - +1.6
505,273 + +1.6
505,273 + -0.4
505,274 - -0.8
505,274 - -0.6
505,274 - -1.0
505,274 - +0.3
505,278 + +0.7
505,281 + +0.4
505,281 + -1.2
505,282 - -0.9
505,282 - -0.0
505,282 - -0.0
505,282 - -1.0
505,282 - -0.3
505,282 - +1.6
505,297 - -0.6
505,297 - -1.3
505,297 - +0.5
505,297 - -1.0
505,363 + +1.0
505,364 - -0.3
505,364 - -1.5
505,378 - -0.2
505,378 - -0.6
505,378 - -0.5
505,378 - -0.4
505,580 - Pf1N1B4_6043 0.19 +0.3
505,616 - Pf1N1B4_6043 0.22 -0.2
505,637 - Pf1N1B4_6043 0.24 +0.3
505,637 - Pf1N1B4_6043 0.24 +0.4
505,714 + +1.4
505,729 + Pf1N1B4_6043 0.31 -0.3
505,730 - Pf1N1B4_6043 0.31 -1.3
505,730 - Pf1N1B4_6043 0.31 -0.6
505,735 + Pf1N1B4_6043 0.32 -1.8
505,736 - Pf1N1B4_6043 0.32 -0.2
505,736 - -1.6
505,753 + Pf1N1B4_6043 0.33 -0.6
506,083 + Pf1N1B4_6043 0.60 +1.2
506,084 - Pf1N1B4_6043 0.60 -1.8
506,084 - Pf1N1B4_6043 0.60 +0.6
506,104 + Pf1N1B4_6043 0.62 -0.2
506,104 + Pf1N1B4_6043 0.62 +1.3
506,104 + Pf1N1B4_6043 0.62 -0.9
506,105 - Pf1N1B4_6043 0.62 -0.4
506,105 - Pf1N1B4_6043 0.62 +0.4
506,186 + -2.0
506,206 - Pf1N1B4_6043 0.70 -1.4
506,206 - Pf1N1B4_6043 0.70 -0.2
506,206 - Pf1N1B4_6043 0.70 -1.8
506,206 - Pf1N1B4_6043 0.70 -0.6
506,309 + Pf1N1B4_6043 0.79 +0.6
506,309 + Pf1N1B4_6043 0.79 -0.4
506,309 + Pf1N1B4_6043 0.79 -1.0
506,310 - +2.3
506,310 - Pf1N1B4_6043 0.79 -1.3
506,310 - Pf1N1B4_6043 0.79 -0.1
506,311 + Pf1N1B4_6043 0.79 +0.4
506,311 + Pf1N1B4_6043 0.79 -1.6
506,311 + Pf1N1B4_6043 0.79 +0.2
506,311 + Pf1N1B4_6043 0.79 -1.1
506,311 + Pf1N1B4_6043 0.79 +1.3
506,311 + Pf1N1B4_6043 0.79 -0.3
506,311 + Pf1N1B4_6043 0.79 -2.0
506,311 + Pf1N1B4_6043 0.79 -1.0
506,312 - Pf1N1B4_6043 0.79 -0.2
506,312 - Pf1N1B4_6043 0.79 -0.6
506,312 - +1.4
506,312 - Pf1N1B4_6043 0.79 -1.1
506,312 - Pf1N1B4_6043 0.79 -0.2
506,312 - Pf1N1B4_6043 0.79 -0.0
506,315 + Pf1N1B4_6043 0.79 -0.6
506,315 + Pf1N1B4_6043 0.79 -0.2
506,315 + Pf1N1B4_6043 0.79 -0.0
506,315 + Pf1N1B4_6043 0.79 -0.2
506,315 + Pf1N1B4_6043 0.79 +1.0
506,315 + Pf1N1B4_6043 0.79 -1.6
506,315 + Pf1N1B4_6043 0.79 -0.8
506,316 - Pf1N1B4_6043 0.79 -0.2
506,316 - Pf1N1B4_6043 0.79 -1.0
506,316 - Pf1N1B4_6043 0.79 +0.4
506,316 - Pf1N1B4_6043 0.79 +2.3
506,316 - Pf1N1B4_6043 0.79 -0.0
506,563 + -0.6
506,563 + -0.6
506,563 + -0.8
506,563 + -0.5
506,563 + -0.6
506,564 - +1.0
506,666 + +1.0
506,667 - -1.2
507,153 + +1.0
507,165 + -0.3
507,165 + -0.8
507,165 + -1.0
507,166 - -0.5
507,166 - -1.0
507,261 + -0.0
507,261 + -0.8
507,261 + -0.6
507,262 - +1.0
507,262 - -0.2
507,272 - +1.0
507,272 - -0.1
507,337 + Pf1N1B4_6045 0.12 +2.1
507,338 - Pf1N1B4_6045 0.12 +1.0
507,406 + Pf1N1B4_6045 0.41 -0.0
507,407 - +2.6
507,407 - Pf1N1B4_6045 0.41 +0.2
507,407 - Pf1N1B4_6045 0.41 -1.6

Or see this region's nucleotide sequence