Experiment: Fumarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_5066 and Pf1N1B4_5067 are separated by 105 nucleotides Pf1N1B4_5067 and Pf1N1B4_5068 overlap by 1 nucleotides Pf1N1B4_5068 and Pf1N1B4_5069 are separated by 202 nucleotides Pf1N1B4_5069 and Pf1N1B4_5070 overlap by 4 nucleotides
Pf1N1B4_5066 - Transcriptional regulator, LysR family, at 5,612,042 to 5,612,935
_5066
Pf1N1B4_5067 - PUTATIVE TRANSFERASE PROTEIN( EC:2.- ), at 5,613,041 to 5,613,706
_5067
Pf1N1B4_5068 - FIG00974267: hypothetical protein, at 5,613,706 to 5,614,368
_5068
Pf1N1B4_5069 - Demethylmenaquinone methyltransferase, at 5,614,571 to 5,615,005
_5069
Pf1N1B4_5070 - Aspartate aminotransferase (EC 2.6.1.1), at 5,615,002 to 5,616,216
_5070
Position (kb)
5613
5614
5615 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5612.957 kb on + strand at 5612.982 kb on + strand at 5613.049 kb on + strand at 5613.521 kb on + strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5613.522 kb on - strand, within Pf1N1B4_5067 at 5614.435 kb on - strand at 5614.692 kb on + strand, within Pf1N1B4_5069 at 5614.732 kb on - strand, within Pf1N1B4_5069 at 5614.888 kb on + strand, within Pf1N1B4_5069 at 5614.889 kb on - strand, within Pf1N1B4_5069 at 5615.327 kb on - strand, within Pf1N1B4_5070
Per-strain Table
Position Strand Gene LocusTag Fraction Fumarate (C) remove 5,612,957 + -0.9 5,612,982 + -1.0 5,613,049 + -0.2 5,613,521 + Pf1N1B4_5067 0.72 -0.4 5,613,522 - Pf1N1B4_5067 0.72 -0.5 5,613,522 - Pf1N1B4_5067 0.72 -1.0 5,613,522 - Pf1N1B4_5067 0.72 -0.0 5,613,522 - Pf1N1B4_5067 0.72 -1.9 5,613,522 - Pf1N1B4_5067 0.72 -0.2 5,613,522 - Pf1N1B4_5067 0.72 -0.8 5,614,435 - -0.5 5,614,692 + Pf1N1B4_5069 0.28 +0.4 5,614,732 - Pf1N1B4_5069 0.37 +1.8 5,614,888 + Pf1N1B4_5069 0.73 -1.2 5,614,889 - Pf1N1B4_5069 0.73 +0.8 5,615,327 - Pf1N1B4_5070 0.27 +1.0
Or see this region's nucleotide sequence