Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5068

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5066 and Pf1N1B4_5067 are separated by 105 nucleotidesPf1N1B4_5067 and Pf1N1B4_5068 overlap by 1 nucleotidesPf1N1B4_5068 and Pf1N1B4_5069 are separated by 202 nucleotidesPf1N1B4_5069 and Pf1N1B4_5070 overlap by 4 nucleotides Pf1N1B4_5066 - Transcriptional regulator, LysR family, at 5,612,042 to 5,612,935 _5066 Pf1N1B4_5067 - PUTATIVE TRANSFERASE PROTEIN( EC:2.- ), at 5,613,041 to 5,613,706 _5067 Pf1N1B4_5068 - FIG00974267: hypothetical protein, at 5,613,706 to 5,614,368 _5068 Pf1N1B4_5069 - Demethylmenaquinone methyltransferase, at 5,614,571 to 5,615,005 _5069 Pf1N1B4_5070 - Aspartate aminotransferase (EC 2.6.1.1), at 5,615,002 to 5,616,216 _5070 Position (kb) 5613 5614 5615Strain fitness (log2 ratio) -2 -1 0 1 2at 5612.957 kb on + strandat 5612.982 kb on + strandat 5613.049 kb on + strandat 5613.521 kb on + strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5613.522 kb on - strand, within Pf1N1B4_5067at 5614.435 kb on - strandat 5614.692 kb on + strand, within Pf1N1B4_5069at 5614.732 kb on - strand, within Pf1N1B4_5069at 5614.888 kb on + strand, within Pf1N1B4_5069at 5614.889 kb on - strand, within Pf1N1B4_5069at 5615.327 kb on - strand, within Pf1N1B4_5070

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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5,612,957 + -0.9
5,612,982 + -1.0
5,613,049 + -0.2
5,613,521 + Pf1N1B4_5067 0.72 -0.4
5,613,522 - Pf1N1B4_5067 0.72 -0.5
5,613,522 - Pf1N1B4_5067 0.72 -1.0
5,613,522 - Pf1N1B4_5067 0.72 -0.0
5,613,522 - Pf1N1B4_5067 0.72 -1.9
5,613,522 - Pf1N1B4_5067 0.72 -0.2
5,613,522 - Pf1N1B4_5067 0.72 -0.8
5,614,435 - -0.5
5,614,692 + Pf1N1B4_5069 0.28 +0.4
5,614,732 - Pf1N1B4_5069 0.37 +1.8
5,614,888 + Pf1N1B4_5069 0.73 -1.2
5,614,889 - Pf1N1B4_5069 0.73 +0.8
5,615,327 - Pf1N1B4_5070 0.27 +1.0

Or see this region's nucleotide sequence