Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2978

Experiment: Fumarate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fumarate (C)
3,337,751	+		Pf1N1B4_2976	0.90	-1.0
3,337,752	-		Pf1N1B4_2976	0.90	-1.0
3,337,752	-		Pf1N1B4_2976	0.90	-0.1
3,337,776	+				-1.3
3,337,777	-				-1.6
3,337,777	-				-0.1
3,337,777	-				-2.5
3,337,777	-				+0.8
3,337,837	+				-0.1
3,337,837	+				+0.3
3,337,837	+				+1.4
3,337,838	-				-0.4
3,337,838	-				+0.7
3,337,847	+				-0.3
3,337,848	-				-1.7
3,337,866	-				-0.0
3,337,915	+				+0.0
3,337,915	+				+1.4
3,337,916	-				+1.4
3,337,988	+				+0.4
3,337,992	+				-0.7
3,337,992	+				-0.1
3,338,010	-				+0.3
3,338,035	-				-0.2
3,338,174	+		Pf1N1B4_2977	0.28	-0.6
3,338,174	+		Pf1N1B4_2977	0.28	+0.9
3,338,175	-		Pf1N1B4_2977	0.28	+0.1
3,338,245	+		Pf1N1B4_2977	0.38	+0.4
3,338,246	-		Pf1N1B4_2977	0.38	+0.1
3,338,299	+		Pf1N1B4_2977	0.45	-0.1
3,338,299	+		Pf1N1B4_2977	0.45	+0.9
3,338,300	-		Pf1N1B4_2977	0.45	+2.2
3,338,300	-		Pf1N1B4_2977	0.45	-0.4
3,338,300	-		Pf1N1B4_2977	0.45	+1.0
3,338,300	-		Pf1N1B4_2977	0.45	-1.1
3,338,300	-		Pf1N1B4_2977	0.45	+0.1
3,338,321	-		Pf1N1B4_2977	0.48	-1.7
3,338,341	+		Pf1N1B4_2977	0.51	-1.1
3,338,341	+		Pf1N1B4_2977	0.51	-0.8
3,338,342	-		Pf1N1B4_2977	0.51	-0.1
3,338,342	-		Pf1N1B4_2977	0.51	-0.0
3,338,342	-		Pf1N1B4_2977	0.51	-0.6
3,338,342	-		Pf1N1B4_2977	0.51	+0.2
3,338,458	+		Pf1N1B4_2977	0.68	+2.4
3,338,458	+				+0.4
3,338,459	-		Pf1N1B4_2977	0.68	+0.2
3,338,459	-		Pf1N1B4_2977	0.68	+0.0
3,338,459	-		Pf1N1B4_2977	0.68	-0.1
3,338,459	-		Pf1N1B4_2977	0.68	+0.9
3,338,459	-		Pf1N1B4_2977	0.68	-0.6
3,338,459	-		Pf1N1B4_2977	0.68	-0.1
3,338,459	-		Pf1N1B4_2977	0.68	-0.1
3,338,472	-		Pf1N1B4_2977	0.70	-0.3
3,338,472	-		Pf1N1B4_2977	0.70	+0.4
3,338,521	+		Pf1N1B4_2977	0.77	+0.7
3,338,522	-		Pf1N1B4_2977	0.77	-1.7
3,338,522	-		Pf1N1B4_2977	0.77	+0.7
3,338,522	-		Pf1N1B4_2977	0.77	-0.0
3,338,581	+		Pf1N1B4_2977	0.85	+1.4
3,338,582	-		Pf1N1B4_2977	0.85	+0.1
3,338,582	-		Pf1N1B4_2977	0.85	-0.5
3,338,582	-		Pf1N1B4_2977	0.85	-1.4
3,338,587	+		Pf1N1B4_2977	0.86	-2.3
3,338,587	+		Pf1N1B4_2977	0.86	+1.4
3,338,587	+		Pf1N1B4_2977	0.86	-0.1
3,338,587	+		Pf1N1B4_2977	0.86	+1.1
3,338,587	+		Pf1N1B4_2977	0.86	-2.3
3,338,587	+		Pf1N1B4_2977	0.86	-0.7
3,338,588	-		Pf1N1B4_2977	0.86	+0.4
3,338,588	-		Pf1N1B4_2977	0.86	-2.0
3,338,588	-		Pf1N1B4_2977	0.86	-0.4
3,338,588	-		Pf1N1B4_2977	0.86	+1.2
3,338,588	-		Pf1N1B4_2977	0.86	+0.2
3,338,588	-		Pf1N1B4_2977	0.86	+1.0
3,338,588	-		Pf1N1B4_2977	0.86	+0.3
3,338,588	-		Pf1N1B4_2977	0.86	-0.6
3,338,588	-		Pf1N1B4_2977	0.86	-1.9
3,338,635	+				+0.1
3,338,683	+				+1.0
3,338,684	-				-0.6
3,338,684	-				+0.6
3,338,684	-				-0.3
3,338,684	-				+0.8
3,338,684	-				-0.3
3,338,684	-				+0.8
3,338,819	+		Pf1N1B4_2978	0.12	-1.4
3,338,820	-		Pf1N1B4_2978	0.13	-0.3
3,338,895	+		Pf1N1B4_2978	0.20	+0.4
3,338,895	+		Pf1N1B4_2978	0.20	+0.6
3,338,895	+		Pf1N1B4_2978	0.20	-0.1
3,338,895	+		Pf1N1B4_2978	0.20	+0.7
3,338,895	+		Pf1N1B4_2978	0.20	+1.1
3,338,896	-		Pf1N1B4_2978	0.20	-0.2
3,339,151	+		Pf1N1B4_2978	0.45	+1.2
3,339,151	+		Pf1N1B4_2978	0.45	-1.3
3,339,348	+		Pf1N1B4_2978	0.65	+0.4
3,339,348	+		Pf1N1B4_2978	0.65	-0.8
3,339,349	-				+0.4
3,339,362	+		Pf1N1B4_2978	0.66	+0.0
3,339,386	+		Pf1N1B4_2978	0.68	-0.4
3,339,386	+		Pf1N1B4_2978	0.68	+1.4
3,339,386	+		Pf1N1B4_2978	0.68	-0.9
3,339,386	+		Pf1N1B4_2978	0.68	+0.3
3,339,386	+				+0.9
3,339,386	+		Pf1N1B4_2978	0.68	-0.9
3,339,386	+		Pf1N1B4_2978	0.68	+0.3
3,339,386	+		Pf1N1B4_2978	0.68	-1.1
3,339,386	+		Pf1N1B4_2978	0.68	+0.4
3,339,387	-		Pf1N1B4_2978	0.68	-1.0
3,339,387	-		Pf1N1B4_2978	0.68	-2.8
3,339,387	-		Pf1N1B4_2978	0.68	+0.6
3,339,387	-		Pf1N1B4_2978	0.68	+0.4
3,339,387	-		Pf1N1B4_2978	0.68	+0.6
3,339,449	+		Pf1N1B4_2978	0.74	+0.2
3,339,449	+				-0.9
3,339,479	+		Pf1N1B4_2978	0.77	+0.7
3,339,557	+		Pf1N1B4_2978	0.85	+0.9
3,339,729	+				-0.4
3,339,758	+				+2.2
3,339,758	+				-0.0
3,339,758	+				-0.7
3,339,759	-				+1.0
3,339,759	-				-0.1
3,339,770	+				-1.4
3,339,782	+				-1.4
3,339,782	+				+0.4
3,339,800	+				+0.4
3,339,800	+				-0.4
3,339,800	+				-0.3
3,339,801	-				-0.7
3,339,801	-				-0.6
3,339,826	+				-1.3
3,339,826	+				+0.4
3,339,826	+				+1.0
3,339,826	+				-0.3
3,339,826	+				-2.3
3,339,826	+				+0.2
3,339,826	+				+0.4
3,339,826	+				-0.7
3,339,826	+				-0.0
3,339,826	+				+0.2
3,339,826	+				-1.4
3,339,826	+				+0.7
3,339,826	+				+0.1
3,339,826	+				+0.9
3,339,826	+				+1.4
3,339,826	+				+0.4
3,339,826	+				+1.2
3,339,826	+				-0.2
3,339,826	+				+0.1
3,339,826	+				-0.9
3,339,826	+				+1.4
3,339,826	+				+2.0
3,339,827	+				+0.7
3,339,827	-				+0.1
3,339,827	-				+0.6
3,339,827	-				+0.9
3,339,827	-				+1.9
3,339,827	-				-0.5
3,339,827	-				-1.1
3,339,827	-				+0.9
3,339,827	-				+0.3
3,339,827	-				-0.7
3,339,827	-				-0.3
3,339,828	+				-0.9
3,339,828	+				+0.4
3,339,829	-				+1.7
3,339,829	-				+0.4
3,339,918	+				-2.0
3,339,919	-				-1.1
3,339,919	-				-0.4
3,339,951	+		Pf1N1B4_2979	0.12	+0.4
3,339,951	+		Pf1N1B4_2979	0.12	+0.4
3,339,952	-		Pf1N1B4_2979	0.12	-1.9
3,340,236	+		Pf1N1B4_2979	0.43	+0.3
3,340,236	+		Pf1N1B4_2979	0.43	+2.2
3,340,236	+		Pf1N1B4_2979	0.43	-0.3
3,340,237	-		Pf1N1B4_2979	0.44	+0.1
3,340,532	+		Pf1N1B4_2979	0.76	-0.1
3,340,532	+		Pf1N1B4_2979	0.76	+0.2
3,340,532	+		Pf1N1B4_2979	0.76	+0.3
3,340,533	-		Pf1N1B4_2979	0.76	-0.6
3,340,551	+		Pf1N1B4_2979	0.78	+1.0
3,340,551	+		Pf1N1B4_2979	0.78	-1.1
3,340,551	+		Pf1N1B4_2979	0.78	-0.3
3,340,552	-		Pf1N1B4_2979	0.78	+0.9
3,340,552	-		Pf1N1B4_2979	0.78	+1.1
3,340,555	-		Pf1N1B4_2979	0.79	+0.2
3,340,555	-		Pf1N1B4_2979	0.79	-0.1
3,340,601	-		Pf1N1B4_2979	0.84	-0.4