Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10905

Experiment: R2A control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK54_RS10900 and LRK54_RS10905 are separated by 6 nucleotidesLRK54_RS10905 and LRK54_RS10910 are separated by 218 nucleotides LRK54_RS10900: LRK54_RS10900 - dihydroorotase, at 2,410,836 to 2,411,888 _RS10900 LRK54_RS10905: LRK54_RS10905 - glutamate--cysteine ligase, at 2,411,895 to 2,413,262 _RS10905 LRK54_RS10910: LRK54_RS10910 - transcription termination factor Rho, at 2,413,481 to 2,415,280 _RS10910 Position (kb) 2411 2412 2413 2414Strain fitness (log2 ratio) -1 0 1at 2411.899 kb on + strandat 2411.900 kb on - strandat 2413.292 kb on + strandat 2413.292 kb on + strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strandat 2413.293 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
remove
2,411,899 + +0.8
2,411,900 - -0.2
2,413,292 + -1.2
2,413,292 + +0.7
2,413,293 - -0.5
2,413,293 - +0.6
2,413,293 - +0.4
2,413,293 - +0.7
2,413,293 - +0.2
2,413,293 - -0.3

Or see this region's nucleotide sequence