Experiment: NAG 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07745 and HMPREF1058_RS07740 are separated by 166 nucleotides HMPREF1058_RS07740 and HMPREF1058_RS07735 are separated by 8 nucleotides HMPREF1058_RS07735 and HMPREF1058_RS07730 are separated by 13 nucleotides
HMPREF1058_RS07745: HMPREF1058_RS07745 - N-acetylglucosamine-6-phosphate deacetylase, at 146,514 to 147,677
_RS07745
HMPREF1058_RS07740: HMPREF1058_RS07740 - threonylcarbamoyl-AMP synthase, at 147,844 to 148,419
_RS07740
HMPREF1058_RS07735: HMPREF1058_RS07735 - chloride channel protein, at 148,428 to 150,230
_RS07735
HMPREF1058_RS07730: HMPREF1058_RS07730 - methionyl-tRNA formyltransferase, at 150,244 to 151,218
_RS07730
Position (kb) 148
149
150
151 Strain fitness (log2 ratio) -1
0
1 at 147.448 kb on + strand, within HMPREF1058_RS07745 at 147.449 kb on - strand, within HMPREF1058_RS07745 at 147.666 kb on - strand at 147.680 kb on + strand at 147.703 kb on - strand at 148.410 kb on + strand at 148.498 kb on + strand at 148.778 kb on + strand, within HMPREF1058_RS07735 at 149.247 kb on + strand, within HMPREF1058_RS07735 at 149.310 kb on + strand, within HMPREF1058_RS07735 at 149.384 kb on + strand, within HMPREF1058_RS07735 at 149.713 kb on + strand, within HMPREF1058_RS07735 at 149.727 kb on + strand, within HMPREF1058_RS07735 at 149.763 kb on + strand, within HMPREF1058_RS07735 at 149.763 kb on + strand, within HMPREF1058_RS07735 at 149.890 kb on + strand, within HMPREF1058_RS07735 at 150.237 kb on + strand at 150.237 kb on + strand at 150.237 kb on + strand at 150.237 kb on + strand at 151.206 kb on + strand at 151.206 kb on + strand at 151.224 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 20 mM (C) remove 147,448 + HMPREF1058_RS07745 0.80 -0.5 147,449 - HMPREF1058_RS07745 0.80 -0.5 147,666 - +0.6 147,680 + +0.8 147,703 - +0.2 148,410 + -0.1 148,498 + -0.9 148,778 + HMPREF1058_RS07735 0.19 -1.0 149,247 + HMPREF1058_RS07735 0.45 -0.3 149,310 + HMPREF1058_RS07735 0.49 -0.4 149,384 + HMPREF1058_RS07735 0.53 +0.0 149,713 + HMPREF1058_RS07735 0.71 -1.6 149,727 + HMPREF1058_RS07735 0.72 -0.1 149,763 + HMPREF1058_RS07735 0.74 -1.5 149,763 + HMPREF1058_RS07735 0.74 -0.6 149,890 + HMPREF1058_RS07735 0.81 +0.0 150,237 + +0.4 150,237 + +0.2 150,237 + +0.3 150,237 + +0.2 151,206 + +0.2 151,206 + -0.1 151,224 - -0.0
Or see this region's nucleotide sequence