Experiment: NAG 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03770 and HMPREF1058_RS03765 are separated by 158 nucleotides HMPREF1058_RS03765 and HMPREF1058_RS03760 are separated by 83 nucleotides HMPREF1058_RS03760 and HMPREF1058_RS03755 are separated by 99 nucleotides
HMPREF1058_RS03770: HMPREF1058_RS03770 - RNA polymerase sigma factor, at 190,389 to 190,892
_RS03770
HMPREF1058_RS03765: HMPREF1058_RS03765 - trimeric intracellular cation channel family protein, at 191,051 to 191,665
_RS03765
HMPREF1058_RS03760: HMPREF1058_RS03760 - UDP-N-acetyl glucosamine 2-epimerase, at 191,749 to 192,837
_RS03760
HMPREF1058_RS03755: HMPREF1058_RS03755 - DUF3078 domain-containing protein, at 192,937 to 194,331
_RS03755
Position (kb) 191
192
193 Strain fitness (log2 ratio) -2
-1
0
1
2 at 190.843 kb on - strand at 190.880 kb on + strand at 190.892 kb on + strand at 191.079 kb on - strand at 191.087 kb on - strand at 191.125 kb on + strand, within HMPREF1058_RS03765 at 191.126 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.136 kb on - strand, within HMPREF1058_RS03765 at 191.177 kb on + strand, within HMPREF1058_RS03765 at 191.254 kb on + strand, within HMPREF1058_RS03765 at 191.255 kb on - strand, within HMPREF1058_RS03765 at 191.307 kb on - strand, within HMPREF1058_RS03765 at 191.309 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.438 kb on + strand, within HMPREF1058_RS03765 at 191.465 kb on + strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.469 kb on - strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.473 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.476 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.559 kb on - strand, within HMPREF1058_RS03765 at 191.562 kb on + strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand at 191.633 kb on + strand at 191.643 kb on - strand at 191.665 kb on + strand at 191.665 kb on + strand at 191.735 kb on + strand at 191.756 kb on + strand at 191.937 kb on - strand, within HMPREF1058_RS03760 at 191.937 kb on - strand, within HMPREF1058_RS03760 at 191.938 kb on + strand, within HMPREF1058_RS03760 at 191.939 kb on - strand, within HMPREF1058_RS03760 at 191.948 kb on + strand, within HMPREF1058_RS03760 at 191.953 kb on - strand, within HMPREF1058_RS03760 at 191.982 kb on + strand, within HMPREF1058_RS03760 at 191.983 kb on - strand, within HMPREF1058_RS03760 at 191.983 kb on - strand, within HMPREF1058_RS03760 at 191.984 kb on + strand, within HMPREF1058_RS03760 at 191.984 kb on + strand, within HMPREF1058_RS03760 at 192.032 kb on + strand, within HMPREF1058_RS03760 at 192.033 kb on - strand, within HMPREF1058_RS03760 at 192.033 kb on - strand, within HMPREF1058_RS03760 at 192.077 kb on + strand, within HMPREF1058_RS03760 at 192.142 kb on - strand, within HMPREF1058_RS03760 at 192.255 kb on - strand, within HMPREF1058_RS03760 at 192.366 kb on - strand, within HMPREF1058_RS03760 at 192.427 kb on - strand, within HMPREF1058_RS03760 at 192.427 kb on - strand, within HMPREF1058_RS03760 at 192.427 kb on - strand, within HMPREF1058_RS03760 at 192.468 kb on + strand, within HMPREF1058_RS03760 at 192.472 kb on + strand, within HMPREF1058_RS03760 at 192.473 kb on - strand, within HMPREF1058_RS03760 at 192.520 kb on + strand, within HMPREF1058_RS03760 at 192.522 kb on + strand, within HMPREF1058_RS03760 at 192.523 kb on - strand, within HMPREF1058_RS03760 at 192.523 kb on - strand, within HMPREF1058_RS03760 at 192.524 kb on + strand, within HMPREF1058_RS03760 at 192.809 kb on + strand at 192.836 kb on - strand at 192.873 kb on + strand at 192.963 kb on + strand at 192.996 kb on + strand at 192.997 kb on - strand at 193.047 kb on + strand at 193.047 kb on + strand at 193.051 kb on - strand at 193.059 kb on - strand at 193.078 kb on - strand, within HMPREF1058_RS03755 at 193.113 kb on - strand, within HMPREF1058_RS03755 at 193.120 kb on - strand, within HMPREF1058_RS03755 at 193.124 kb on + strand, within HMPREF1058_RS03755 at 193.182 kb on + strand, within HMPREF1058_RS03755 at 193.231 kb on - strand, within HMPREF1058_RS03755 at 193.254 kb on + strand, within HMPREF1058_RS03755 at 193.268 kb on + strand, within HMPREF1058_RS03755 at 193.268 kb on + strand, within HMPREF1058_RS03755 at 193.269 kb on - strand, within HMPREF1058_RS03755 at 193.269 kb on - strand, within HMPREF1058_RS03755 at 193.281 kb on - strand, within HMPREF1058_RS03755 at 193.332 kb on + strand, within HMPREF1058_RS03755 at 193.407 kb on + strand, within HMPREF1058_RS03755 at 193.409 kb on + strand, within HMPREF1058_RS03755 at 193.449 kb on + strand, within HMPREF1058_RS03755 at 193.474 kb on + strand, within HMPREF1058_RS03755 at 193.474 kb on + strand, within HMPREF1058_RS03755 at 193.475 kb on - strand, within HMPREF1058_RS03755 at 193.521 kb on - strand, within HMPREF1058_RS03755 at 193.521 kb on - strand, within HMPREF1058_RS03755 at 193.521 kb on - strand, within HMPREF1058_RS03755 at 193.525 kb on - strand, within HMPREF1058_RS03755 at 193.533 kb on + strand, within HMPREF1058_RS03755 at 193.663 kb on - strand, within HMPREF1058_RS03755 at 193.665 kb on - strand, within HMPREF1058_RS03755 at 193.682 kb on + strand, within HMPREF1058_RS03755 at 193.739 kb on - strand, within HMPREF1058_RS03755 at 193.831 kb on + strand, within HMPREF1058_RS03755
Per-strain Table
Position Strand Gene LocusTag Fraction NAG 20 mM (C) remove 190,843 - +0.0 190,880 + -1.1 190,892 + -0.4 191,079 - +0.8 191,087 - -0.7 191,125 + HMPREF1058_RS03765 0.12 +2.2 191,126 - HMPREF1058_RS03765 0.12 +0.4 191,129 - HMPREF1058_RS03765 0.13 +1.2 191,129 - HMPREF1058_RS03765 0.13 -0.5 191,129 - HMPREF1058_RS03765 0.13 +0.2 191,136 - HMPREF1058_RS03765 0.14 -0.3 191,177 + HMPREF1058_RS03765 0.20 +1.4 191,254 + HMPREF1058_RS03765 0.33 +1.2 191,255 - HMPREF1058_RS03765 0.33 -0.7 191,307 - HMPREF1058_RS03765 0.42 -0.2 191,309 - HMPREF1058_RS03765 0.42 -0.5 191,411 - HMPREF1058_RS03765 0.59 +0.2 191,411 - HMPREF1058_RS03765 0.59 -0.5 191,422 - HMPREF1058_RS03765 0.60 +0.3 191,422 - HMPREF1058_RS03765 0.60 -2.2 191,438 + HMPREF1058_RS03765 0.63 +0.2 191,465 + HMPREF1058_RS03765 0.67 -0.4 191,466 - HMPREF1058_RS03765 0.67 +0.9 191,466 - HMPREF1058_RS03765 0.67 -1.7 191,469 - HMPREF1058_RS03765 0.68 -0.7 191,472 + HMPREF1058_RS03765 0.68 +1.0 191,472 + HMPREF1058_RS03765 0.68 -0.6 191,473 - HMPREF1058_RS03765 0.69 +0.3 191,475 - HMPREF1058_RS03765 0.69 -0.2 191,475 - HMPREF1058_RS03765 0.69 -1.0 191,476 + HMPREF1058_RS03765 0.69 +0.7 191,527 + HMPREF1058_RS03765 0.77 +0.3 191,527 + HMPREF1058_RS03765 0.77 +0.8 191,559 - HMPREF1058_RS03765 0.83 -0.0 191,562 + HMPREF1058_RS03765 0.83 -0.1 191,563 - HMPREF1058_RS03765 0.83 +1.0 191,563 - HMPREF1058_RS03765 0.83 -1.8 191,563 - HMPREF1058_RS03765 0.83 -2.6 191,563 - +0.6 191,633 + +0.2 191,643 - -0.5 191,665 + +0.8 191,665 + -0.5 191,735 + -0.2 191,756 + -1.1 191,937 - HMPREF1058_RS03760 0.17 -1.9 191,937 - HMPREF1058_RS03760 0.17 +1.0 191,938 + HMPREF1058_RS03760 0.17 -0.5 191,939 - HMPREF1058_RS03760 0.17 -0.2 191,948 + HMPREF1058_RS03760 0.18 -0.6 191,953 - HMPREF1058_RS03760 0.19 -0.8 191,982 + HMPREF1058_RS03760 0.21 -2.2 191,983 - HMPREF1058_RS03760 0.21 -0.5 191,983 - HMPREF1058_RS03760 0.21 +0.2 191,984 + HMPREF1058_RS03760 0.22 -0.6 191,984 + HMPREF1058_RS03760 0.22 -1.7 192,032 + HMPREF1058_RS03760 0.26 +2.2 192,033 - HMPREF1058_RS03760 0.26 -2.0 192,033 - HMPREF1058_RS03760 0.26 -1.5 192,077 + HMPREF1058_RS03760 0.30 -0.1 192,142 - HMPREF1058_RS03760 0.36 -1.8 192,255 - HMPREF1058_RS03760 0.46 -0.0 192,366 - HMPREF1058_RS03760 0.57 -1.0 192,427 - HMPREF1058_RS03760 0.62 -0.5 192,427 - HMPREF1058_RS03760 0.62 -2.3 192,427 - HMPREF1058_RS03760 0.62 -1.1 192,468 + HMPREF1058_RS03760 0.66 -1.3 192,472 + HMPREF1058_RS03760 0.66 +0.0 192,473 - HMPREF1058_RS03760 0.66 -1.4 192,520 + HMPREF1058_RS03760 0.71 +1.5 192,522 + HMPREF1058_RS03760 0.71 -0.6 192,523 - HMPREF1058_RS03760 0.71 -0.9 192,523 - HMPREF1058_RS03760 0.71 +0.3 192,524 + HMPREF1058_RS03760 0.71 -0.5 192,809 + -0.4 192,836 - -0.1 192,873 + +0.5 192,963 + -1.0 192,996 + -0.3 192,997 - -0.2 193,047 + -0.3 193,047 + -2.1 193,051 - +0.3 193,059 - +0.0 193,078 - HMPREF1058_RS03755 0.10 -0.2 193,113 - HMPREF1058_RS03755 0.13 -0.5 193,120 - HMPREF1058_RS03755 0.13 -0.5 193,124 + HMPREF1058_RS03755 0.13 -1.3 193,182 + HMPREF1058_RS03755 0.18 -0.8 193,231 - HMPREF1058_RS03755 0.21 +0.1 193,254 + HMPREF1058_RS03755 0.23 +1.6 193,268 + HMPREF1058_RS03755 0.24 +0.8 193,268 + HMPREF1058_RS03755 0.24 -0.3 193,269 - HMPREF1058_RS03755 0.24 -1.7 193,269 - HMPREF1058_RS03755 0.24 -0.3 193,281 - HMPREF1058_RS03755 0.25 -0.2 193,332 + HMPREF1058_RS03755 0.28 +0.6 193,407 + HMPREF1058_RS03755 0.34 +0.3 193,409 + HMPREF1058_RS03755 0.34 +0.9 193,449 + HMPREF1058_RS03755 0.37 -0.6 193,474 + HMPREF1058_RS03755 0.38 -1.3 193,474 + HMPREF1058_RS03755 0.38 +0.6 193,475 - HMPREF1058_RS03755 0.39 +0.9 193,521 - HMPREF1058_RS03755 0.42 -0.1 193,521 - HMPREF1058_RS03755 0.42 -0.1 193,521 - HMPREF1058_RS03755 0.42 -0.9 193,525 - HMPREF1058_RS03755 0.42 +0.5 193,533 + HMPREF1058_RS03755 0.43 -0.8 193,663 - HMPREF1058_RS03755 0.52 -0.1 193,665 - HMPREF1058_RS03755 0.52 -0.7 193,682 + HMPREF1058_RS03755 0.53 -1.4 193,739 - HMPREF1058_RS03755 0.57 -0.6 193,831 + HMPREF1058_RS03755 0.64 +0.2
Or see this region's nucleotide sequence