Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02181

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02180 and CCNA_02181 are separated by 87 nucleotidesCCNA_02181 and CCNA_02182 overlap by 4 nucleotidesCCNA_02182 and CCNA_02183 overlap by 20 nucleotides CCNA_02180: CCNA_02180 - iron-sulfur cluster assembly/repair protein ApbC, at 2,331,553 to 2,332,653 _02180 CCNA_02181: CCNA_02181 - phosphatase/phosphohexomutase family protein, at 2,332,741 to 2,333,406 _02181 CCNA_02182: CCNA_02182 - phosphoserine phosphatase, at 2,333,403 to 2,334,281 _02182 CCNA_02183: CCNA_02183 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 2,334,262 to 2,335,152 _02183 Position (kb) 2332 2333 2334Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2332.435 kb on - strand, within CCNA_02180at 2332.504 kb on - strand, within CCNA_02180at 2332.574 kb on + strandat 2332.574 kb on + strandat 2332.676 kb on - strandat 2332.710 kb on + strandat 2332.710 kb on + strandat 2332.718 kb on - strandat 2332.718 kb on - strandat 2332.718 kb on - strandat 2332.751 kb on + strandat 2332.752 kb on - strandat 2332.752 kb on - strandat 2332.752 kb on - strandat 2332.774 kb on + strandat 2332.800 kb on - strandat 2332.832 kb on - strand, within CCNA_02181at 2332.842 kb on + strand, within CCNA_02181at 2332.859 kb on - strand, within CCNA_02181at 2332.964 kb on - strand, within CCNA_02181at 2332.969 kb on - strand, within CCNA_02181at 2332.982 kb on + strand, within CCNA_02181at 2333.001 kb on + strand, within CCNA_02181at 2333.003 kb on + strand, within CCNA_02181at 2333.009 kb on - strand, within CCNA_02181at 2333.022 kb on + strand, within CCNA_02181at 2333.022 kb on + strand, within CCNA_02181at 2333.030 kb on - strand, within CCNA_02181at 2333.049 kb on - strand, within CCNA_02181at 2333.070 kb on + strand, within CCNA_02181at 2333.078 kb on - strand, within CCNA_02181at 2333.080 kb on + strand, within CCNA_02181at 2333.107 kb on - strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.171 kb on + strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.179 kb on - strand, within CCNA_02181at 2333.199 kb on - strand, within CCNA_02181at 2333.278 kb on - strand, within CCNA_02181at 2333.292 kb on - strand, within CCNA_02181at 2333.310 kb on - strand, within CCNA_02181at 2333.325 kb on - strand, within CCNA_02181at 2333.376 kb on - strandat 2333.422 kb on + strandat 2333.440 kb on - strandat 2333.445 kb on - strandat 2333.451 kb on + strandat 2333.470 kb on + strandat 2333.484 kb on - strandat 2333.523 kb on - strand, within CCNA_02182at 2333.571 kb on + strand, within CCNA_02182at 2333.602 kb on - strand, within CCNA_02182at 2333.602 kb on - strand, within CCNA_02182at 2333.602 kb on - strand, within CCNA_02182at 2333.651 kb on - strand, within CCNA_02182at 2333.675 kb on + strand, within CCNA_02182at 2333.677 kb on + strand, within CCNA_02182at 2333.678 kb on - strand, within CCNA_02182at 2333.707 kb on + strand, within CCNA_02182at 2333.717 kb on - strand, within CCNA_02182at 2333.717 kb on - strand, within CCNA_02182at 2333.717 kb on - strand, within CCNA_02182at 2333.805 kb on - strand, within CCNA_02182at 2333.835 kb on - strand, within CCNA_02182at 2333.840 kb on - strand, within CCNA_02182at 2333.922 kb on + strand, within CCNA_02182at 2333.924 kb on - strand, within CCNA_02182at 2333.935 kb on + strand, within CCNA_02182at 2333.961 kb on + strand, within CCNA_02182at 2333.964 kb on - strand, within CCNA_02182at 2333.977 kb on - strand, within CCNA_02182at 2334.018 kb on - strand, within CCNA_02182at 2334.033 kb on - strand, within CCNA_02182at 2334.042 kb on + strand, within CCNA_02182at 2334.092 kb on - strand, within CCNA_02182at 2334.162 kb on + strand, within CCNA_02182at 2334.162 kb on + strand, within CCNA_02182at 2334.170 kb on - strand, within CCNA_02182at 2334.191 kb on - strand, within CCNA_02182at 2334.223 kb on + strandat 2334.270 kb on - strandat 2334.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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2,332,435 - CCNA_02180 0.80 -2.0
2,332,504 - CCNA_02180 0.86 -1.8
2,332,574 + -1.4
2,332,574 + -2.9
2,332,676 - -0.3
2,332,710 + +1.9
2,332,710 + -1.1
2,332,718 - -1.1
2,332,718 - -1.3
2,332,718 - -2.8
2,332,751 + +0.3
2,332,752 - -0.6
2,332,752 - +0.9
2,332,752 - +0.7
2,332,774 + +1.2
2,332,800 - +1.0
2,332,832 - CCNA_02181 0.14 -1.5
2,332,842 + CCNA_02181 0.15 -0.8
2,332,859 - CCNA_02181 0.18 +2.0
2,332,964 - CCNA_02181 0.33 +2.5
2,332,969 - CCNA_02181 0.34 -1.9
2,332,982 + CCNA_02181 0.36 +1.7
2,333,001 + CCNA_02181 0.39 +0.3
2,333,003 + CCNA_02181 0.39 -2.3
2,333,009 - CCNA_02181 0.40 +1.7
2,333,022 + CCNA_02181 0.42 +0.4
2,333,022 + CCNA_02181 0.42 +1.1
2,333,030 - CCNA_02181 0.43 +1.5
2,333,049 - CCNA_02181 0.46 +0.9
2,333,070 + CCNA_02181 0.49 +0.3
2,333,078 - CCNA_02181 0.51 -1.6
2,333,080 + CCNA_02181 0.51 -1.5
2,333,107 - CCNA_02181 0.55 +0.8
2,333,171 + CCNA_02181 0.65 +0.9
2,333,171 + CCNA_02181 0.65 -0.2
2,333,171 + CCNA_02181 0.65 -2.2
2,333,171 + CCNA_02181 0.65 -0.6
2,333,171 + CCNA_02181 0.65 -0.1
2,333,171 + CCNA_02181 0.65 -0.8
2,333,171 + CCNA_02181 0.65 -1.8
2,333,179 - CCNA_02181 0.66 -0.9
2,333,179 - CCNA_02181 0.66 -1.6
2,333,179 - CCNA_02181 0.66 +0.6
2,333,179 - CCNA_02181 0.66 +1.6
2,333,179 - CCNA_02181 0.66 -2.2
2,333,179 - CCNA_02181 0.66 +1.7
2,333,179 - CCNA_02181 0.66 +0.8
2,333,199 - CCNA_02181 0.69 -1.8
2,333,278 - CCNA_02181 0.81 +2.8
2,333,292 - CCNA_02181 0.83 +1.4
2,333,310 - CCNA_02181 0.85 +0.7
2,333,325 - CCNA_02181 0.88 -2.0
2,333,376 - +0.9
2,333,422 + -2.2
2,333,440 - -2.0
2,333,445 - -1.7
2,333,451 + -0.8
2,333,470 + +1.2
2,333,484 - -2.1
2,333,523 - CCNA_02182 0.14 -0.3
2,333,571 + CCNA_02182 0.19 -1.5
2,333,602 - CCNA_02182 0.23 +0.0
2,333,602 - CCNA_02182 0.23 +0.2
2,333,602 - CCNA_02182 0.23 -1.0
2,333,651 - CCNA_02182 0.28 -1.2
2,333,675 + CCNA_02182 0.31 -1.5
2,333,677 + CCNA_02182 0.31 -3.1
2,333,678 - CCNA_02182 0.31 -1.9
2,333,707 + CCNA_02182 0.35 -1.5
2,333,717 - CCNA_02182 0.36 -2.2
2,333,717 - CCNA_02182 0.36 +1.0
2,333,717 - CCNA_02182 0.36 -1.1
2,333,805 - CCNA_02182 0.46 -1.9
2,333,835 - CCNA_02182 0.49 -1.2
2,333,840 - CCNA_02182 0.50 -1.4
2,333,922 + CCNA_02182 0.59 -1.1
2,333,924 - CCNA_02182 0.59 -2.1
2,333,935 + CCNA_02182 0.61 -2.2
2,333,961 + CCNA_02182 0.63 -2.2
2,333,964 - CCNA_02182 0.64 -2.5
2,333,977 - CCNA_02182 0.65 -0.6
2,334,018 - CCNA_02182 0.70 -1.3
2,334,033 - CCNA_02182 0.72 -2.2
2,334,042 + CCNA_02182 0.73 -2.6
2,334,092 - CCNA_02182 0.78 -1.7
2,334,162 + CCNA_02182 0.86 -1.9
2,334,162 + CCNA_02182 0.86 -1.1
2,334,170 - CCNA_02182 0.87 -1.2
2,334,191 - CCNA_02182 0.90 -1.6
2,334,223 + -3.3
2,334,270 - -2.2
2,334,270 - -0.3

Or see this region's nucleotide sequence