Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01733

Experiment: L-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Alanine (C)
1,860,922	+		CCNA_01732	0.40	+1.5
1,860,922	+				+0.9
1,860,947	-		CCNA_01732	0.42	+1.4
1,860,984	-		CCNA_01732	0.44	-2.8
1,861,011	-		CCNA_01732	0.46	+1.0
1,861,063	+		CCNA_01732	0.50	-0.3
1,861,123	-		CCNA_01732	0.54	-2.2
1,861,190	-		CCNA_01732	0.59	-1.4
1,861,214	-		CCNA_01732	0.61	-1.3
1,861,216	+		CCNA_01732	0.61	-2.0
1,861,216	+		CCNA_01732	0.61	-2.2
1,861,234	-		CCNA_01732	0.62	+0.1
1,861,234	-		CCNA_01732	0.62	+1.6
1,861,291	-		CCNA_01732	0.67	-0.5
1,861,340	-		CCNA_01732	0.70	-2.1
1,861,357	+		CCNA_01732	0.71	+1.1
1,861,421	+		CCNA_01732	0.76	-1.6
1,861,426	+		CCNA_01732	0.76	+1.8
1,861,429	-		CCNA_01732	0.77	+1.2
1,861,439	+		CCNA_01732	0.77	+1.2
1,861,443	-		CCNA_01732	0.78	+0.9
1,861,448	-		CCNA_01732	0.78	+2.7
1,861,450	+		CCNA_01732	0.78	+0.6
1,861,453	-		CCNA_01732	0.78	+1.2
1,861,528	-		CCNA_01732	0.84	-0.2
1,861,532	-		CCNA_01732	0.84	+0.9
1,861,567	+		CCNA_01732	0.87	-1.5
1,861,567	+		CCNA_01732	0.87	-1.9
1,861,574	+		CCNA_01732	0.87	-1.1
1,861,582	-		CCNA_01732	0.88	+1.5
1,861,582	-		CCNA_01732	0.88	+0.7
1,861,599	+		CCNA_01732	0.89	+0.7
1,861,602	-		CCNA_01732	0.89	+1.6
1,861,637	+				+0.7
1,861,637	+				-2.5
1,861,645	-				+1.0
1,861,645	-				+2.3
1,861,645	-				+1.8
1,861,664	-				+0.6
1,861,676	+				-1.8
1,861,681	+				-0.5
1,861,694	-				+0.6
1,861,699	+				+1.8
1,861,707	-				-1.5
1,861,707	-				-0.1
1,861,707	-				+2.8
1,861,720	-				-2.3
1,861,749	-				-1.1
1,861,789	+				+1.5
1,861,792	-				-0.2
1,861,823	+				+2.3
1,861,823	+				+1.3
1,861,828	+				+2.0
1,861,831	-				+0.6
1,861,831	-				+0.3
1,861,836	+				+0.4
1,861,862	-				+2.1
1,861,879	+				+1.1
1,861,883	+				+2.2
1,861,891	-				+1.0
1,861,903	-				-2.4
1,861,935	+				+2.1
1,861,995	-				+1.3
1,861,997	+		CCNA_01733	0.16	+1.8
1,862,026	-		CCNA_01733	0.18	+1.7
1,862,026	-		CCNA_01733	0.18	+2.1
1,862,026	-		CCNA_01733	0.18	+0.9
1,862,026	-		CCNA_01733	0.18	+2.2
1,862,045	+		CCNA_01733	0.20	+1.4
1,862,090	+		CCNA_01733	0.24	-2.4
1,862,178	+		CCNA_01733	0.32	+1.4
1,862,181	-		CCNA_01733	0.32	+0.5
1,862,253	+		CCNA_01733	0.39	-1.5
1,862,279	+		CCNA_01733	0.41	+0.8
1,862,279	+		CCNA_01733	0.41	+1.0
1,862,287	-		CCNA_01733	0.42	+3.5
1,862,287	-		CCNA_01733	0.42	+1.9
1,862,354	-		CCNA_01733	0.48	+2.1
1,862,356	-		CCNA_01733	0.48	+0.7
1,862,398	+		CCNA_01733	0.52	+2.6
1,862,399	-		CCNA_01733	0.52	+1.5
1,862,412	-		CCNA_01733	0.54	+2.3
1,862,412	-		CCNA_01733	0.54	+1.2
1,862,412	-		CCNA_01733	0.54	+1.2
1,862,423	+		CCNA_01733	0.55	+1.9
1,862,423	+		CCNA_01733	0.55	+3.2
1,862,431	-		CCNA_01733	0.55	+1.4
1,862,465	-		CCNA_01733	0.58	+0.1
1,862,465	-		CCNA_01733	0.58	+1.8
1,862,475	-		CCNA_01733	0.59	+2.0
1,862,483	-		CCNA_01733	0.60	+1.0
1,862,504	+		CCNA_01733	0.62	+1.1
1,862,509	+		CCNA_01733	0.62	-1.2
1,862,537	+		CCNA_01733	0.65	+2.0
1,862,575	-		CCNA_01733	0.68	+1.6
1,862,577	+		CCNA_01733	0.69	-2.1
1,862,583	+		CCNA_01733	0.69	+1.9
1,862,591	-		CCNA_01733	0.70	-1.7
1,862,591	-		CCNA_01733	0.70	+0.7
1,862,611	-		CCNA_01733	0.72	+1.4
1,862,636	-		CCNA_01733	0.74	-1.4
1,862,638	-		CCNA_01733	0.74	+0.9
1,862,648	+		CCNA_01733	0.75	+1.3
1,862,649	-		CCNA_01733	0.75	+1.8
1,862,663	+		CCNA_01733	0.76	+2.6
1,862,675	+		CCNA_01733	0.78	+1.4
1,862,705	+		CCNA_01733	0.80	-0.4
1,862,705	+				+1.8
1,862,705	+		CCNA_01733	0.80	-0.8
1,862,712	+		CCNA_01733	0.81	+1.0
1,862,713	-		CCNA_01733	0.81	+2.0
1,862,720	-		CCNA_01733	0.82	+1.8
1,862,745	-		CCNA_01733	0.84	-1.2
1,862,857	-				+1.5
1,862,864	-				+2.4
1,862,915	+				+3.5
1,862,927	+				+2.1
1,862,927	+				-0.2
1,862,935	-				-2.4
1,862,956	-				+0.0
1,863,027	+				-0.2
1,863,027	+				-3.0
1,863,035	-		CCNA_01734	0.11	-1.1
1,863,054	+		CCNA_01734	0.14	+0.6
1,863,062	-		CCNA_01734	0.15	-0.6
1,863,062	-		CCNA_01734	0.15	-1.0
1,863,093	+		CCNA_01734	0.19	-1.1
1,863,101	-		CCNA_01734	0.21	+2.4
1,863,106	-		CCNA_01734	0.21	+3.3
1,863,111	+		CCNA_01734	0.22	-0.8
1,863,111	-		CCNA_01734	0.22	-1.5
1,863,123	+		CCNA_01734	0.24	-0.5
1,863,126	-		CCNA_01734	0.24	-0.9
1,863,148	-		CCNA_01734	0.27	+0.4
1,863,148	-		CCNA_01734	0.27	+1.1
1,863,153	-		CCNA_01734	0.28	+0.5
1,863,280	-		CCNA_01734	0.47	-0.2
1,863,298	+		CCNA_01734	0.49	+0.8
1,863,306	-		CCNA_01734	0.50	-1.7
1,863,318	+		CCNA_01734	0.52	+2.3
1,863,345	-		CCNA_01734	0.56	+0.5
1,863,423	-		CCNA_01734	0.67	-2.2
1,863,425	+		CCNA_01734	0.68	-2.1
1,863,425	+		CCNA_01734	0.68	+0.6
1,863,430	+		CCNA_01734	0.68	-1.8
1,863,483	-		CCNA_01734	0.76	-1.6
1,863,528	+		CCNA_01734	0.83	+1.2
1,863,528	+		CCNA_01734	0.83	-0.7
1,863,528	+		CCNA_01734	0.83	-0.3
1,863,528	+		CCNA_01734	0.83	+1.9
1,863,528	+		CCNA_01734	0.83	-0.7
1,863,528	+		CCNA_01734	0.83	-1.0
1,863,536	-		CCNA_01734	0.84	+0.5
1,863,536	-		CCNA_01734	0.84	-1.8
1,863,536	-		CCNA_01734	0.84	+0.3
1,863,536	-		CCNA_01734	0.84	+0.4
1,863,536	-		CCNA_01734	0.84	+2.0
1,863,536	-		CCNA_01734	0.84	-2.7
1,863,536	-		CCNA_01734	0.84	+0.7
1,863,545	+		CCNA_01734	0.85	-3.1
1,863,553	-		CCNA_01734	0.86	+1.9
1,863,553	-		CCNA_01734	0.86	+2.1
1,863,588	+				-0.2
1,863,616	+				-1.9
1,863,616	+				+0.3
1,863,616	+				-0.6
1,863,624	-				-1.0
1,863,624	-				+0.2
1,863,624	-				+0.3
1,863,624	-				-0.9
1,863,624	-				-0.9
1,863,731	-				+0.9
1,863,736	-				-0.6
1,863,737	+				+0.1
1,863,741	+				-2.4
1,863,745	-				+0.8
1,863,772	-		CCNA_01735	0.14	-1.5
1,863,773	+		CCNA_01735	0.14	+0.3
1,863,773	+		CCNA_01735	0.14	-0.3
1,863,793	-		CCNA_01735	0.18	-1.2
1,863,910	+		CCNA_01735	0.42	-1.2
1,863,910	+		CCNA_01735	0.42	-0.1
1,863,918	-		CCNA_01735	0.44	+0.8
1,863,918	-		CCNA_01735	0.44	-1.9
1,863,918	-		CCNA_01735	0.44	-1.9