Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00632

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00630 and CCNA_00631 overlap by 4 nucleotidesCCNA_00631 and CCNA_00632 overlap by 4 nucleotidesCCNA_00632 and CCNA_00633 overlap by 4 nucleotides CCNA_00630: CCNA_00630 - chemotaxis histidine kinase protein cheAII, at 676,286 to 678,580 _00630 CCNA_00631: CCNA_00631 - chemotaxis protein cheW, at 678,577 to 679,029 _00631 CCNA_00632: CCNA_00632 - chemotaxis receiver domain protein CheYII, at 679,026 to 679,394 _00632 CCNA_00633: CCNA_00633 - receiver domain-glutamate methylesterase CheBII, at 679,391 to 680,467 _00633 Position (kb) 679 680Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 678.113 kb on + strand, within CCNA_00630at 678.142 kb on + strand, within CCNA_00630at 678.163 kb on + strand, within CCNA_00630at 678.181 kb on - strand, within CCNA_00630at 678.220 kb on + strand, within CCNA_00630at 678.243 kb on + strand, within CCNA_00630at 678.244 kb on - strand, within CCNA_00630at 678.315 kb on - strand, within CCNA_00630at 678.316 kb on - strand, within CCNA_00630at 678.325 kb on - strand, within CCNA_00630at 678.349 kb on - strand, within CCNA_00630at 678.361 kb on + strandat 678.361 kb on + strandat 678.369 kb on - strandat 678.369 kb on - strandat 678.399 kb on - strandat 678.403 kb on + strandat 678.411 kb on - strandat 678.415 kb on + strandat 678.423 kb on - strandat 678.448 kb on + strandat 678.448 kb on + strandat 678.469 kb on - strandat 678.469 kb on - strandat 678.495 kb on + strandat 678.521 kb on - strandat 678.532 kb on + strandat 678.532 kb on + strandat 678.532 kb on + strandat 678.540 kb on - strandat 678.567 kb on + strandat 678.588 kb on + strandat 678.588 kb on + strandat 678.593 kb on + strandat 678.593 kb on + strandat 678.596 kb on - strandat 678.596 kb on - strandat 678.626 kb on + strand, within CCNA_00631at 678.627 kb on - strand, within CCNA_00631at 678.627 kb on - strand, within CCNA_00631at 678.635 kb on + strand, within CCNA_00631at 678.661 kb on - strand, within CCNA_00631at 678.661 kb on - strand, within CCNA_00631at 678.662 kb on - strand, within CCNA_00631at 678.668 kb on + strand, within CCNA_00631at 678.672 kb on - strand, within CCNA_00631at 678.674 kb on + strand, within CCNA_00631at 678.749 kb on - strand, within CCNA_00631at 678.764 kb on + strand, within CCNA_00631at 678.772 kb on - strand, within CCNA_00631at 678.772 kb on - strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.809 kb on + strand, within CCNA_00631at 678.812 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.817 kb on - strand, within CCNA_00631at 678.869 kb on + strand, within CCNA_00631at 678.869 kb on + strand, within CCNA_00631at 678.884 kb on + strand, within CCNA_00631at 678.887 kb on - strand, within CCNA_00631at 678.922 kb on + strand, within CCNA_00631at 678.974 kb on - strand, within CCNA_00631at 678.980 kb on + strand, within CCNA_00631at 679.011 kb on + strandat 679.030 kb on + strandat 679.038 kb on - strandat 679.038 kb on - strandat 679.038 kb on - strandat 679.044 kb on + strandat 679.079 kb on + strand, within CCNA_00632at 679.079 kb on + strand, within CCNA_00632at 679.079 kb on + strand, within CCNA_00632at 679.079 kb on + strand, within CCNA_00632at 679.079 kb on - strand, within CCNA_00632at 679.087 kb on - strand, within CCNA_00632at 679.098 kb on + strand, within CCNA_00632at 679.126 kb on + strand, within CCNA_00632at 679.126 kb on + strand, within CCNA_00632at 679.146 kb on + strand, within CCNA_00632at 679.149 kb on - strand, within CCNA_00632at 679.154 kb on - strand, within CCNA_00632at 679.181 kb on - strand, within CCNA_00632at 679.203 kb on + strand, within CCNA_00632at 679.211 kb on - strand, within CCNA_00632at 679.250 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.257 kb on + strand, within CCNA_00632at 679.262 kb on + strand, within CCNA_00632at 679.272 kb on + strand, within CCNA_00632at 679.291 kb on + strand, within CCNA_00632at 679.299 kb on - strand, within CCNA_00632at 679.376 kb on + strandat 679.422 kb on - strandat 679.437 kb on - strandat 679.437 kb on - strandat 679.446 kb on + strandat 679.479 kb on + strandat 679.479 kb on + strandat 679.479 kb on + strandat 679.479 kb on + strandat 679.487 kb on - strandat 679.487 kb on - strandat 679.487 kb on - strandat 679.501 kb on - strand, within CCNA_00633at 679.537 kb on + strand, within CCNA_00633at 679.550 kb on - strand, within CCNA_00633at 679.554 kb on - strand, within CCNA_00633at 679.569 kb on + strand, within CCNA_00633at 679.579 kb on - strand, within CCNA_00633at 679.615 kb on + strand, within CCNA_00633at 679.615 kb on + strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.623 kb on - strand, within CCNA_00633at 679.657 kb on + strand, within CCNA_00633at 679.667 kb on - strand, within CCNA_00633at 679.677 kb on - strand, within CCNA_00633at 679.681 kb on + strand, within CCNA_00633at 679.743 kb on - strand, within CCNA_00633at 679.758 kb on + strand, within CCNA_00633at 679.758 kb on + strand, within CCNA_00633at 679.758 kb on - strand, within CCNA_00633at 679.763 kb on + strand, within CCNA_00633at 679.766 kb on - strand, within CCNA_00633at 679.776 kb on - strand, within CCNA_00633at 679.781 kb on - strand, within CCNA_00633at 679.783 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.831 kb on + strand, within CCNA_00633at 679.839 kb on - strand, within CCNA_00633at 679.839 kb on - strand, within CCNA_00633at 679.854 kb on + strand, within CCNA_00633at 679.858 kb on + strand, within CCNA_00633at 679.878 kb on + strand, within CCNA_00633at 679.888 kb on + strand, within CCNA_00633at 679.896 kb on - strandat 679.896 kb on - strand, within CCNA_00633at 679.909 kb on - strand, within CCNA_00633at 679.920 kb on - strand, within CCNA_00633at 679.923 kb on + strand, within CCNA_00633at 679.972 kb on - strand, within CCNA_00633at 679.982 kb on - strand, within CCNA_00633at 679.982 kb on - strand, within CCNA_00633at 679.988 kb on + strand, within CCNA_00633at 679.996 kb on - strand, within CCNA_00633at 680.007 kb on + strand, within CCNA_00633at 680.019 kb on + strand, within CCNA_00633at 680.023 kb on + strand, within CCNA_00633at 680.038 kb on + strand, within CCNA_00633at 680.066 kb on + strand, within CCNA_00633at 680.066 kb on + strand, within CCNA_00633at 680.074 kb on - strand, within CCNA_00633at 680.074 kb on - strand, within CCNA_00633at 680.074 kb on - strand, within CCNA_00633at 680.098 kb on + strand, within CCNA_00633at 680.098 kb on + strand, within CCNA_00633at 680.122 kb on + strand, within CCNA_00633at 680.130 kb on - strand, within CCNA_00633at 680.130 kb on - strand, within CCNA_00633at 680.200 kb on + strand, within CCNA_00633at 680.206 kb on + strand, within CCNA_00633at 680.208 kb on - strand, within CCNA_00633at 680.216 kb on + strand, within CCNA_00633at 680.216 kb on + strand, within CCNA_00633at 680.224 kb on - strand, within CCNA_00633at 680.224 kb on - strand, within CCNA_00633at 680.224 kb on - strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.236 kb on + strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.244 kb on - strand, within CCNA_00633at 680.255 kb on - strand, within CCNA_00633at 680.262 kb on - strand, within CCNA_00633at 680.281 kb on - strand, within CCNA_00633at 680.282 kb on - strand, within CCNA_00633at 680.325 kb on - strand, within CCNA_00633at 680.326 kb on + strand, within CCNA_00633at 680.336 kb on + strand, within CCNA_00633at 680.341 kb on + strand, within CCNA_00633at 680.345 kb on - strand, within CCNA_00633at 680.360 kb on + strandat 680.371 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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678,113 + CCNA_00630 0.80 -1.9
678,142 + CCNA_00630 0.81 +0.6
678,163 + CCNA_00630 0.82 -2.1
678,181 - CCNA_00630 0.83 -1.8
678,220 + CCNA_00630 0.84 +1.9
678,243 + CCNA_00630 0.85 +1.0
678,244 - CCNA_00630 0.85 +0.8
678,315 - CCNA_00630 0.88 +1.2
678,316 - CCNA_00630 0.88 +0.6
678,325 - CCNA_00630 0.89 -1.2
678,349 - CCNA_00630 0.90 +0.3
678,361 + +1.3
678,361 + -1.4
678,369 - -2.8
678,369 - -0.9
678,399 - -0.4
678,403 + -0.1
678,411 - -2.8
678,415 + +0.9
678,423 - +2.1
678,448 + -2.5
678,448 + -1.6
678,469 - +1.3
678,469 - -3.5
678,495 + +1.1
678,521 - -3.0
678,532 + -0.9
678,532 + -2.7
678,532 + +1.3
678,540 - -1.3
678,567 + +1.2
678,588 + -1.1
678,588 + +1.6
678,593 + -2.2
678,593 + +1.1
678,596 - +0.6
678,596 - -1.4
678,626 + CCNA_00631 0.11 -2.4
678,627 - CCNA_00631 0.11 +1.3
678,627 - CCNA_00631 0.11 -0.1
678,635 + CCNA_00631 0.13 +0.8
678,661 - CCNA_00631 0.19 +3.1
678,661 - CCNA_00631 0.19 -0.9
678,662 - CCNA_00631 0.19 +0.9
678,668 + CCNA_00631 0.20 -1.1
678,672 - CCNA_00631 0.21 -1.1
678,674 + CCNA_00631 0.21 -0.3
678,749 - CCNA_00631 0.38 -1.9
678,764 + CCNA_00631 0.41 -1.6
678,772 - CCNA_00631 0.43 -0.0
678,772 - CCNA_00631 0.43 +1.0
678,809 + CCNA_00631 0.51 -2.3
678,809 + CCNA_00631 0.51 -0.7
678,809 + CCNA_00631 0.51 +0.6
678,809 + CCNA_00631 0.51 -1.6
678,809 + CCNA_00631 0.51 -1.2
678,812 - CCNA_00631 0.52 -1.9
678,817 - CCNA_00631 0.53 -2.8
678,817 - CCNA_00631 0.53 -2.2
678,817 - CCNA_00631 0.53 +0.5
678,817 - CCNA_00631 0.53 +1.1
678,817 - CCNA_00631 0.53 -1.8
678,869 + CCNA_00631 0.64 +2.2
678,869 + CCNA_00631 0.64 -0.1
678,884 + CCNA_00631 0.68 -2.4
678,887 - CCNA_00631 0.68 -0.9
678,922 + CCNA_00631 0.76 -0.2
678,974 - CCNA_00631 0.88 +2.1
678,980 + CCNA_00631 0.89 +1.6
679,011 + -2.5
679,030 + +1.6
679,038 - -2.6
679,038 - -0.4
679,038 - -1.1
679,044 + -1.1
679,079 + CCNA_00632 0.14 -0.8
679,079 + CCNA_00632 0.14 -1.6
679,079 + CCNA_00632 0.14 -0.7
679,079 + CCNA_00632 0.14 +0.1
679,079 - CCNA_00632 0.14 -0.6
679,087 - CCNA_00632 0.17 +3.4
679,098 + CCNA_00632 0.20 +1.6
679,126 + CCNA_00632 0.27 +1.1
679,126 + CCNA_00632 0.27 +1.6
679,146 + CCNA_00632 0.33 +3.2
679,149 - CCNA_00632 0.33 +1.8
679,154 - CCNA_00632 0.35 +1.5
679,181 - CCNA_00632 0.42 -2.2
679,203 + CCNA_00632 0.48 +0.5
679,211 - CCNA_00632 0.50 -0.4
679,250 + CCNA_00632 0.61 -1.8
679,257 + CCNA_00632 0.63 -2.1
679,257 + CCNA_00632 0.63 +3.0
679,257 + CCNA_00632 0.63 +1.0
679,257 + CCNA_00632 0.63 -2.7
679,262 + CCNA_00632 0.64 +0.2
679,272 + CCNA_00632 0.67 -0.1
679,291 + CCNA_00632 0.72 +0.9
679,299 - CCNA_00632 0.74 +0.4
679,376 + -0.6
679,422 - -2.5
679,437 - +1.8
679,437 - -2.2
679,446 + +1.5
679,479 + -2.5
679,479 + +0.9
679,479 + +2.8
679,479 + -0.2
679,487 - -2.6
679,487 - +0.1
679,487 - -1.9
679,501 - CCNA_00633 0.10 -0.9
679,537 + CCNA_00633 0.14 -0.5
679,550 - CCNA_00633 0.15 -0.1
679,554 - CCNA_00633 0.15 -1.5
679,569 + CCNA_00633 0.17 +0.6
679,579 - CCNA_00633 0.17 -0.0
679,615 + CCNA_00633 0.21 -1.1
679,615 + CCNA_00633 0.21 -2.5
679,623 - CCNA_00633 0.22 -1.2
679,623 - CCNA_00633 0.22 +0.0
679,623 - CCNA_00633 0.22 +0.3
679,623 - CCNA_00633 0.22 +0.4
679,657 + CCNA_00633 0.25 +1.4
679,667 - CCNA_00633 0.26 +1.5
679,677 - CCNA_00633 0.27 -0.9
679,681 + CCNA_00633 0.27 -3.9
679,743 - CCNA_00633 0.33 -1.2
679,758 + CCNA_00633 0.34 -0.8
679,758 + CCNA_00633 0.34 -0.7
679,758 - CCNA_00633 0.34 -2.2
679,763 + CCNA_00633 0.35 +0.4
679,766 - CCNA_00633 0.35 +0.3
679,776 - CCNA_00633 0.36 -0.4
679,781 - CCNA_00633 0.36 +0.4
679,783 + CCNA_00633 0.36 +1.6
679,831 + CCNA_00633 0.41 -2.2
679,831 + CCNA_00633 0.41 -1.2
679,831 + CCNA_00633 0.41 +3.1
679,831 + CCNA_00633 0.41 -3.1
679,831 + CCNA_00633 0.41 -0.2
679,831 + CCNA_00633 0.41 -0.6
679,839 - CCNA_00633 0.42 -1.9
679,839 - CCNA_00633 0.42 -1.4
679,854 + CCNA_00633 0.43 +1.2
679,858 + CCNA_00633 0.43 +0.2
679,878 + CCNA_00633 0.45 -1.7
679,888 + CCNA_00633 0.46 -0.4
679,896 - +0.2
679,896 - CCNA_00633 0.47 +0.2
679,909 - CCNA_00633 0.48 +0.8
679,920 - CCNA_00633 0.49 -1.0
679,923 + CCNA_00633 0.49 -2.7
679,972 - CCNA_00633 0.54 +1.8
679,982 - CCNA_00633 0.55 -1.7
679,982 - CCNA_00633 0.55 -2.5
679,988 + CCNA_00633 0.55 +2.7
679,996 - CCNA_00633 0.56 -1.5
680,007 + CCNA_00633 0.57 -2.7
680,019 + CCNA_00633 0.58 +0.9
680,023 + CCNA_00633 0.59 -0.6
680,038 + CCNA_00633 0.60 -2.3
680,066 + CCNA_00633 0.63 -2.3
680,066 + CCNA_00633 0.63 -2.9
680,074 - CCNA_00633 0.63 -1.7
680,074 - CCNA_00633 0.63 -1.9
680,074 - CCNA_00633 0.63 -0.4
680,098 + CCNA_00633 0.66 +1.0
680,098 + CCNA_00633 0.66 +1.4
680,122 + CCNA_00633 0.68 +1.3
680,130 - CCNA_00633 0.69 +0.7
680,130 - CCNA_00633 0.69 +1.4
680,200 + CCNA_00633 0.75 -0.7
680,206 + CCNA_00633 0.76 -0.1
680,208 - CCNA_00633 0.76 -3.0
680,216 + CCNA_00633 0.77 +1.6
680,216 + CCNA_00633 0.77 +0.4
680,224 - CCNA_00633 0.77 +0.2
680,224 - CCNA_00633 0.77 +0.8
680,224 - CCNA_00633 0.77 +0.2
680,236 + CCNA_00633 0.78 +1.3
680,236 + CCNA_00633 0.78 -3.5
680,236 + CCNA_00633 0.78 +1.2
680,236 + CCNA_00633 0.78 -1.9
680,236 + CCNA_00633 0.78 -0.8
680,236 + CCNA_00633 0.78 -0.6
680,236 + CCNA_00633 0.78 -3.1
680,236 + CCNA_00633 0.78 +0.9
680,236 + CCNA_00633 0.78 +1.0
680,236 + CCNA_00633 0.78 -1.6
680,236 + CCNA_00633 0.78 -1.4
680,244 - CCNA_00633 0.79 -0.3
680,244 - CCNA_00633 0.79 +1.7
680,244 - CCNA_00633 0.79 +3.1
680,244 - CCNA_00633 0.79 -1.1
680,244 - CCNA_00633 0.79 +1.0
680,244 - CCNA_00633 0.79 -0.2
680,244 - CCNA_00633 0.79 -0.3
680,244 - CCNA_00633 0.79 -0.5
680,244 - CCNA_00633 0.79 -3.1
680,244 - CCNA_00633 0.79 -1.9
680,255 - CCNA_00633 0.80 -1.9
680,262 - CCNA_00633 0.81 -1.1
680,281 - CCNA_00633 0.83 -0.6
680,282 - CCNA_00633 0.83 +0.1
680,325 - CCNA_00633 0.87 +1.1
680,326 + CCNA_00633 0.87 +2.4
680,336 + CCNA_00633 0.88 +0.7
680,341 + CCNA_00633 0.88 -1.7
680,345 - CCNA_00633 0.89 -2.0
680,360 + -0.9
680,371 + +0.2

Or see this region's nucleotide sequence