Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00170 and CCNA_00171 are separated by 189 nucleotides CCNA_00171 and CCNA_00172 overlap by 4 nucleotides
CCNA_00170: CCNA_00170 - TonB-dependent receptor, at 182,997 to 185,663
_00170
CCNA_00171: CCNA_00171 - type II secretion pathway protein C, at 185,853 to 186,290
_00171
CCNA_00172: CCNA_00172 - type II secretion pathway protein D, at 186,287 to 188,350
_00172
Position (kb) 185
186
187 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 184.898 kb on + strand, within CCNA_00170 at 184.939 kb on + strand, within CCNA_00170 at 184.964 kb on + strand, within CCNA_00170 at 184.967 kb on - strand, within CCNA_00170 at 184.986 kb on + strand, within CCNA_00170 at 185.030 kb on + strand, within CCNA_00170 at 185.030 kb on + strand, within CCNA_00170 at 185.052 kb on + strand, within CCNA_00170 at 185.079 kb on + strand, within CCNA_00170 at 185.114 kb on + strand, within CCNA_00170 at 185.114 kb on + strand, within CCNA_00170 at 185.125 kb on - strand, within CCNA_00170 at 185.136 kb on + strand, within CCNA_00170 at 185.162 kb on + strand, within CCNA_00170 at 185.162 kb on + strand, within CCNA_00170 at 185.169 kb on + strand, within CCNA_00170 at 185.170 kb on - strand, within CCNA_00170 at 185.174 kb on + strand, within CCNA_00170 at 185.174 kb on + strand, within CCNA_00170 at 185.229 kb on + strand, within CCNA_00170 at 185.255 kb on + strand, within CCNA_00170 at 185.289 kb on + strand, within CCNA_00170 at 185.305 kb on - strand, within CCNA_00170 at 185.308 kb on + strand, within CCNA_00170 at 185.322 kb on + strand, within CCNA_00170 at 185.322 kb on + strand, within CCNA_00170 at 185.344 kb on + strand, within CCNA_00170 at 185.344 kb on + strand, within CCNA_00170 at 185.352 kb on - strand, within CCNA_00170 at 185.352 kb on - strand, within CCNA_00170 at 185.356 kb on + strand, within CCNA_00170 at 185.356 kb on + strand, within CCNA_00170 at 185.356 kb on + strand, within CCNA_00170 at 185.364 kb on - strand, within CCNA_00170 at 185.390 kb on - strand, within CCNA_00170 at 185.391 kb on + strand, within CCNA_00170 at 185.394 kb on - strand, within CCNA_00170 at 185.394 kb on - strand, within CCNA_00170 at 185.425 kb on + strand at 185.425 kb on + strand at 185.433 kb on - strand at 185.433 kb on - strand at 185.435 kb on + strand at 185.445 kb on + strand at 185.465 kb on - strand at 185.467 kb on + strand at 185.485 kb on + strand at 185.493 kb on - strand at 185.502 kb on + strand at 185.510 kb on - strand at 185.511 kb on + strand at 185.511 kb on - strand at 185.511 kb on - strand at 185.511 kb on - strand at 185.511 kb on - strand at 185.511 kb on - strand at 185.511 kb on - strand at 185.511 kb on - strand at 185.566 kb on + strand at 185.574 kb on + strand at 185.574 kb on - strand at 185.582 kb on - strand at 185.606 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.657 kb on + strand at 185.665 kb on - strand at 185.665 kb on - strand at 185.665 kb on - strand at 185.665 kb on - strand at 185.679 kb on - strand at 185.684 kb on + strand at 185.692 kb on - strand at 185.703 kb on + strand at 185.711 kb on - strand at 185.759 kb on + strand at 185.809 kb on + strand at 185.809 kb on + strand at 185.814 kb on + strand at 185.817 kb on - strand at 185.818 kb on + strand at 185.855 kb on - strand at 185.856 kb on - strand at 185.860 kb on + strand at 185.860 kb on + strand at 185.861 kb on + strand at 185.867 kb on + strand at 185.868 kb on - strand at 185.892 kb on - strand at 185.892 kb on - strand at 185.892 kb on - strand at 185.898 kb on - strand, within CCNA_00171 at 185.912 kb on - strand, within CCNA_00171 at 185.920 kb on + strand, within CCNA_00171 at 186.036 kb on - strand, within CCNA_00171 at 186.038 kb on + strand, within CCNA_00171 at 186.038 kb on + strand at 186.141 kb on - strand, within CCNA_00171 at 186.150 kb on + strand, within CCNA_00171 at 186.170 kb on + strand, within CCNA_00171 at 186.178 kb on - strand, within CCNA_00171 at 186.202 kb on + strand, within CCNA_00171 at 186.220 kb on - strand, within CCNA_00171 at 186.242 kb on + strand, within CCNA_00171 at 186.242 kb on + strand, within CCNA_00171 at 186.264 kb on + strand at 186.264 kb on + strand at 186.264 kb on + strand at 186.269 kb on + strand at 186.271 kb on + strand at 186.271 kb on + strand at 186.272 kb on - strand at 186.272 kb on - strand at 186.279 kb on - strand at 186.314 kb on + strand at 186.340 kb on + strand at 186.346 kb on + strand at 186.348 kb on - strand at 186.357 kb on + strand at 186.401 kb on + strand at 186.504 kb on + strand, within CCNA_00172 at 186.520 kb on - strand, within CCNA_00172 at 186.532 kb on + strand, within CCNA_00172 at 186.532 kb on + strand, within CCNA_00172 at 186.532 kb on + strand, within CCNA_00172 at 186.541 kb on + strand, within CCNA_00172 at 186.603 kb on + strand, within CCNA_00172 at 186.611 kb on - strand, within CCNA_00172 at 186.636 kb on - strand, within CCNA_00172 at 186.738 kb on + strand, within CCNA_00172 at 186.742 kb on + strand, within CCNA_00172 at 186.742 kb on + strand, within CCNA_00172 at 186.744 kb on - strand, within CCNA_00172 at 186.744 kb on - strand, within CCNA_00172 at 186.767 kb on + strand, within CCNA_00172 at 186.823 kb on - strand, within CCNA_00172 at 186.826 kb on + strand, within CCNA_00172 at 186.830 kb on + strand, within CCNA_00172 at 186.830 kb on + strand, within CCNA_00172 at 186.835 kb on + strand, within CCNA_00172 at 186.838 kb on - strand, within CCNA_00172 at 186.847 kb on + strand, within CCNA_00172 at 186.847 kb on + strand, within CCNA_00172 at 186.847 kb on + strand, within CCNA_00172 at 186.856 kb on - strand, within CCNA_00172 at 186.861 kb on + strand, within CCNA_00172 at 186.861 kb on + strand, within CCNA_00172 at 186.869 kb on - strand, within CCNA_00172 at 186.891 kb on + strand, within CCNA_00172 at 186.891 kb on + strand, within CCNA_00172 at 186.896 kb on + strand, within CCNA_00172 at 186.899 kb on - strand, within CCNA_00172 at 186.904 kb on - strand, within CCNA_00172 at 186.926 kb on + strand, within CCNA_00172 at 186.931 kb on + strand, within CCNA_00172 at 186.931 kb on + strand, within CCNA_00172 at 186.939 kb on - strand, within CCNA_00172 at 186.939 kb on - strand, within CCNA_00172 at 186.939 kb on - strand, within CCNA_00172 at 186.939 kb on - strand, within CCNA_00172 at 186.950 kb on - strand at 186.965 kb on - strand, within CCNA_00172 at 186.965 kb on - strand, within CCNA_00172 at 187.013 kb on + strand, within CCNA_00172 at 187.021 kb on - strand, within CCNA_00172 at 187.021 kb on - strand at 187.060 kb on + strand, within CCNA_00172 at 187.066 kb on - strand, within CCNA_00172 at 187.096 kb on + strand, within CCNA_00172 at 187.096 kb on + strand, within CCNA_00172 at 187.111 kb on + strand, within CCNA_00172 at 187.152 kb on + strand, within CCNA_00172 at 187.164 kb on + strand, within CCNA_00172 at 187.172 kb on - strand, within CCNA_00172 at 187.230 kb on + strand, within CCNA_00172 at 187.268 kb on + strand, within CCNA_00172
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 184,898 + CCNA_00170 0.71 +0.2 184,939 + CCNA_00170 0.73 -1.4 184,964 + CCNA_00170 0.74 -0.5 184,967 - CCNA_00170 0.74 +0.8 184,986 + CCNA_00170 0.75 -1.3 185,030 + CCNA_00170 0.76 +1.2 185,030 + CCNA_00170 0.76 +0.5 185,052 + CCNA_00170 0.77 -0.5 185,079 + CCNA_00170 0.78 -2.7 185,114 + CCNA_00170 0.79 -0.0 185,114 + CCNA_00170 0.79 +0.5 185,125 - CCNA_00170 0.80 +0.6 185,136 + CCNA_00170 0.80 +0.9 185,162 + CCNA_00170 0.81 +0.7 185,162 + CCNA_00170 0.81 -2.5 185,169 + CCNA_00170 0.81 -0.9 185,170 - CCNA_00170 0.81 +0.1 185,174 + CCNA_00170 0.82 -1.9 185,174 + CCNA_00170 0.82 +0.5 185,229 + CCNA_00170 0.84 +0.8 185,255 + CCNA_00170 0.85 +1.5 185,289 + CCNA_00170 0.86 +0.3 185,305 - CCNA_00170 0.87 -0.1 185,308 + CCNA_00170 0.87 -0.0 185,322 + CCNA_00170 0.87 +1.5 185,322 + CCNA_00170 0.87 -0.5 185,344 + CCNA_00170 0.88 -1.4 185,344 + CCNA_00170 0.88 -1.8 185,352 - CCNA_00170 0.88 -3.8 185,352 - CCNA_00170 0.88 +1.3 185,356 + CCNA_00170 0.88 +1.6 185,356 + CCNA_00170 0.88 -1.1 185,356 + CCNA_00170 0.88 +4.8 185,364 - CCNA_00170 0.89 -3.0 185,390 - CCNA_00170 0.90 -2.8 185,391 + CCNA_00170 0.90 +3.4 185,394 - CCNA_00170 0.90 +2.0 185,394 - CCNA_00170 0.90 -0.5 185,425 + +1.4 185,425 + +0.7 185,433 - +1.7 185,433 - -1.5 185,435 + +1.5 185,445 + -0.2 185,465 - -1.5 185,467 + +1.2 185,485 + +2.4 185,493 - -2.9 185,502 + -1.7 185,510 - -0.0 185,511 + +1.7 185,511 - -1.2 185,511 - -0.5 185,511 - +0.1 185,511 - -0.0 185,511 - +0.8 185,511 - -2.7 185,511 - -2.5 185,566 + +1.3 185,574 + +1.2 185,574 - -1.7 185,582 - -0.9 185,606 + +0.3 185,657 + +0.6 185,657 + -0.0 185,657 + +0.4 185,657 + +1.3 185,657 + -2.1 185,657 + -0.6 185,657 + +1.8 185,657 + -1.1 185,657 + -1.6 185,657 + -0.3 185,657 + +1.2 185,665 - -0.3 185,665 - +0.3 185,665 - +1.5 185,665 - +0.3 185,679 - -2.0 185,684 + +0.4 185,692 - -1.4 185,703 + -0.5 185,711 - +0.4 185,759 + -2.7 185,809 + -1.7 185,809 + -2.4 185,814 + -1.8 185,817 - +0.1 185,818 + +0.1 185,855 - +1.2 185,856 - -1.3 185,860 + -0.3 185,860 + -1.0 185,861 + +1.1 185,867 + +0.7 185,868 - +1.0 185,892 - +1.4 185,892 - +1.5 185,892 - -1.5 185,898 - CCNA_00171 0.10 +0.9 185,912 - CCNA_00171 0.13 +0.2 185,920 + CCNA_00171 0.15 -2.4 186,036 - CCNA_00171 0.42 -1.5 186,038 + CCNA_00171 0.42 -0.3 186,038 + +1.3 186,141 - CCNA_00171 0.66 -1.8 186,150 + CCNA_00171 0.68 +0.1 186,170 + CCNA_00171 0.72 -1.9 186,178 - CCNA_00171 0.74 -1.3 186,202 + CCNA_00171 0.80 -0.5 186,220 - CCNA_00171 0.84 +0.7 186,242 + CCNA_00171 0.89 +0.3 186,242 + CCNA_00171 0.89 -2.5 186,264 + +1.9 186,264 + +1.3 186,264 + +0.4 186,269 + +2.5 186,271 + +0.2 186,271 + +2.6 186,272 - +1.3 186,272 - +1.2 186,279 - -0.5 186,314 + +1.0 186,340 + +2.1 186,346 + +1.2 186,348 - -2.1 186,357 + +0.6 186,401 + -1.5 186,504 + CCNA_00172 0.11 -1.3 186,520 - CCNA_00172 0.11 +1.8 186,532 + CCNA_00172 0.12 -0.5 186,532 + CCNA_00172 0.12 +0.0 186,532 + CCNA_00172 0.12 -0.7 186,541 + CCNA_00172 0.12 +1.7 186,603 + CCNA_00172 0.15 -0.7 186,611 - CCNA_00172 0.16 +1.5 186,636 - CCNA_00172 0.17 -1.9 186,738 + CCNA_00172 0.22 +2.5 186,742 + CCNA_00172 0.22 -2.8 186,742 + CCNA_00172 0.22 +3.0 186,744 - CCNA_00172 0.22 +0.3 186,744 - CCNA_00172 0.22 +1.1 186,767 + CCNA_00172 0.23 +1.5 186,823 - CCNA_00172 0.26 +1.5 186,826 + CCNA_00172 0.26 -1.0 186,830 + CCNA_00172 0.26 -0.7 186,830 + CCNA_00172 0.26 -0.7 186,835 + CCNA_00172 0.27 +0.6 186,838 - CCNA_00172 0.27 -1.2 186,847 + CCNA_00172 0.27 +1.1 186,847 + CCNA_00172 0.27 +1.4 186,847 + CCNA_00172 0.27 +0.9 186,856 - CCNA_00172 0.28 -0.0 186,861 + CCNA_00172 0.28 +2.2 186,861 + CCNA_00172 0.28 +0.9 186,869 - CCNA_00172 0.28 +2.2 186,891 + CCNA_00172 0.29 -0.9 186,891 + CCNA_00172 0.29 -1.1 186,896 + CCNA_00172 0.30 -0.8 186,899 - CCNA_00172 0.30 -0.2 186,904 - CCNA_00172 0.30 -0.1 186,926 + CCNA_00172 0.31 +3.2 186,931 + CCNA_00172 0.31 +0.8 186,931 + CCNA_00172 0.31 +0.7 186,939 - CCNA_00172 0.32 +0.2 186,939 - CCNA_00172 0.32 -0.7 186,939 - CCNA_00172 0.32 -2.1 186,939 - CCNA_00172 0.32 -1.7 186,950 - +1.7 186,965 - CCNA_00172 0.33 -0.5 186,965 - CCNA_00172 0.33 +2.7 187,013 + CCNA_00172 0.35 +1.3 187,021 - CCNA_00172 0.36 +1.9 187,021 - +0.7 187,060 + CCNA_00172 0.37 +0.5 187,066 - CCNA_00172 0.38 +0.4 187,096 + CCNA_00172 0.39 -0.9 187,096 + CCNA_00172 0.39 -1.6 187,111 + CCNA_00172 0.40 -3.0 187,152 + CCNA_00172 0.42 -0.2 187,164 + CCNA_00172 0.42 +0.5 187,172 - CCNA_00172 0.43 -1.6 187,230 + CCNA_00172 0.46 -0.3 187,268 + CCNA_00172 0.48 -1.4
Or see this region's nucleotide sequence