Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00079 and CCNA_00080 are separated by 193 nucleotides CCNA_00080 and CCNA_00081 are separated by 34 nucleotides CCNA_00081 and CCNA_00082 are separated by 249 nucleotides
CCNA_00079: CCNA_00079 - MerR-family transcriptional regulator, at 83,414 to 83,893
_00079
CCNA_00080: CCNA_00080 - LexA-related transcriptional repressor, at 84,087 to 84,728
_00080
CCNA_00081: CCNA_00081 - hypothetical protein, at 84,763 to 84,972
_00081
CCNA_00082: CCNA_00082 - class 1 lysyl-tRNA synthetase, at 85,222 to 86,880
_00082
Position (kb) 84
85 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 83.770 kb on - strand, within CCNA_00079 at 83.770 kb on - strand, within CCNA_00079 at 83.783 kb on + strand, within CCNA_00079 at 83.791 kb on - strand, within CCNA_00079 at 83.805 kb on + strand, within CCNA_00079 at 83.837 kb on - strand, within CCNA_00079 at 83.882 kb on - strand at 83.903 kb on + strand at 83.949 kb on - strand at 83.960 kb on + strand at 83.968 kb on - strand at 83.968 kb on - strand at 84.015 kb on - strand at 84.022 kb on - strand at 84.046 kb on + strand at 84.046 kb on + strand at 84.549 kb on - strand, within CCNA_00080 at 84.551 kb on + strand, within CCNA_00080 at 84.594 kb on + strand, within CCNA_00080 at 84.645 kb on + strand, within CCNA_00080 at 84.645 kb on + strand, within CCNA_00080 at 84.653 kb on - strand, within CCNA_00080 at 84.745 kb on + strand at 84.753 kb on - strand at 84.758 kb on - strand at 84.759 kb on + strand at 84.761 kb on + strand at 84.761 kb on + strand at 84.769 kb on - strand at 84.769 kb on - strand at 84.769 kb on - strand at 84.830 kb on + strand, within CCNA_00081 at 84.830 kb on + strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.838 kb on - strand, within CCNA_00081 at 84.840 kb on + strand, within CCNA_00081 at 84.843 kb on - strand, within CCNA_00081 at 84.863 kb on + strand, within CCNA_00081 at 84.873 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.878 kb on + strand, within CCNA_00081 at 84.884 kb on + strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.886 kb on - strand, within CCNA_00081 at 84.901 kb on + strand, within CCNA_00081 at 84.909 kb on - strand, within CCNA_00081 at 84.951 kb on + strand, within CCNA_00081 at 84.951 kb on + strand, within CCNA_00081 at 84.957 kb on + strand at 84.974 kb on + strand at 84.990 kb on - strand at 84.996 kb on - strand at 85.008 kb on - strand at 85.015 kb on + strand at 85.017 kb on - strand at 85.017 kb on - strand at 85.022 kb on - strand at 85.024 kb on + strand at 85.040 kb on + strand at 85.048 kb on - strand at 85.070 kb on - strand at 85.083 kb on + strand at 85.091 kb on - strand at 85.125 kb on + strand at 85.127 kb on + strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.133 kb on - strand at 85.135 kb on - strand at 85.153 kb on - strand at 85.166 kb on + strand at 85.196 kb on - strand at 85.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 83,770 - CCNA_00079 0.74 -1.2 83,770 - CCNA_00079 0.74 -1.9 83,783 + CCNA_00079 0.77 +2.0 83,791 - CCNA_00079 0.79 +0.1 83,805 + CCNA_00079 0.81 -0.7 83,837 - CCNA_00079 0.88 -1.6 83,882 - -0.1 83,903 + +1.7 83,949 - -0.3 83,960 + -0.2 83,968 - +1.0 83,968 - -1.4 84,015 - -0.7 84,022 - -2.0 84,046 + -0.2 84,046 + +1.4 84,549 - CCNA_00080 0.72 -0.5 84,551 + CCNA_00080 0.72 -1.5 84,594 + CCNA_00080 0.79 -0.2 84,645 + CCNA_00080 0.87 +0.3 84,645 + CCNA_00080 0.87 -1.2 84,653 - CCNA_00080 0.88 -0.7 84,745 + -1.5 84,753 - +0.2 84,758 - +1.6 84,759 + -0.9 84,761 + +0.8 84,761 + +0.2 84,769 - +0.8 84,769 - +0.4 84,769 - -2.2 84,830 + CCNA_00081 0.32 -1.4 84,830 + CCNA_00081 0.32 +0.8 84,838 - CCNA_00081 0.36 +2.1 84,838 - CCNA_00081 0.36 -0.4 84,840 + CCNA_00081 0.37 -0.1 84,843 - CCNA_00081 0.38 -0.1 84,863 + CCNA_00081 0.48 +3.1 84,873 + CCNA_00081 0.52 +0.4 84,878 + CCNA_00081 0.55 +1.4 84,878 + CCNA_00081 0.55 +2.4 84,878 + CCNA_00081 0.55 -0.9 84,878 + CCNA_00081 0.55 +0.0 84,884 + CCNA_00081 0.58 +1.7 84,886 - CCNA_00081 0.59 +1.5 84,886 - CCNA_00081 0.59 -1.4 84,901 + CCNA_00081 0.66 +1.0 84,909 - CCNA_00081 0.70 +1.0 84,951 + CCNA_00081 0.90 -0.4 84,951 + CCNA_00081 0.90 +1.2 84,957 + +0.3 84,974 + -1.3 84,990 - +0.6 84,996 - +2.9 85,008 - +1.1 85,015 + +1.1 85,017 - -0.3 85,017 - -0.1 85,022 - +0.6 85,024 + -0.3 85,040 + -3.3 85,048 - +0.3 85,070 - +0.5 85,083 + +1.3 85,091 - +2.0 85,125 + +0.4 85,127 + +1.1 85,133 - +1.0 85,133 - +2.0 85,133 - +0.9 85,133 - -0.9 85,135 - -1.0 85,153 - -1.2 85,166 + -1.5 85,196 - +0.3 85,223 - +0.6
Or see this region's nucleotide sequence