Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00076

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00075 and CCNA_00076 are separated by 66 nucleotidesCCNA_00076 and CCNA_00077 overlap by 4 nucleotides CCNA_00075: CCNA_00075 - 3-ketoacyl-CoA thiolase, at 78,703 to 79,908 _00075 CCNA_00076: CCNA_00076 - hypothetical protein, at 79,975 to 80,358 _00076 CCNA_00077: CCNA_00077 - acyl-CoA dehydrogenase, long-chain specific, at 80,355 to 81,530 _00077 Position (kb) 79 80 81Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 78.985 kb on - strand, within CCNA_00075at 78.997 kb on + strand, within CCNA_00075at 78.997 kb on + strand, within CCNA_00075at 79.005 kb on - strand, within CCNA_00075at 79.007 kb on + strand, within CCNA_00075at 79.010 kb on - strand, within CCNA_00075at 79.017 kb on + strand, within CCNA_00075at 79.029 kb on + strand, within CCNA_00075at 79.037 kb on - strand, within CCNA_00075at 79.039 kb on + strand, within CCNA_00075at 79.047 kb on - strand, within CCNA_00075at 79.052 kb on + strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.086 kb on - strand, within CCNA_00075at 79.106 kb on - strand, within CCNA_00075at 79.116 kb on - strand, within CCNA_00075at 79.139 kb on + strand, within CCNA_00075at 79.145 kb on - strand, within CCNA_00075at 79.176 kb on - strand, within CCNA_00075at 79.182 kb on + strand, within CCNA_00075at 79.227 kb on - strand, within CCNA_00075at 79.264 kb on - strand, within CCNA_00075at 79.289 kb on + strand, within CCNA_00075at 79.297 kb on - strand, within CCNA_00075at 79.300 kb on + strand, within CCNA_00075at 79.309 kb on + strand, within CCNA_00075at 79.309 kb on + strand, within CCNA_00075at 79.314 kb on + strand, within CCNA_00075at 79.357 kb on + strand, within CCNA_00075at 79.369 kb on + strand, within CCNA_00075at 79.429 kb on + strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.445 kb on - strand, within CCNA_00075at 79.460 kb on + strand, within CCNA_00075at 79.470 kb on - strand, within CCNA_00075at 79.491 kb on - strand, within CCNA_00075at 79.595 kb on + strand, within CCNA_00075at 79.612 kb on + strand, within CCNA_00075at 79.621 kb on + strand, within CCNA_00075at 79.643 kb on + strand, within CCNA_00075at 79.674 kb on - strand, within CCNA_00075at 79.689 kb on + strand, within CCNA_00075at 79.714 kb on + strand, within CCNA_00075at 79.731 kb on + strand, within CCNA_00075at 79.741 kb on + strand, within CCNA_00075at 79.749 kb on - strand, within CCNA_00075at 79.749 kb on - strand, within CCNA_00075at 79.761 kb on - strand, within CCNA_00075at 79.778 kb on - strand, within CCNA_00075at 79.779 kb on - strand, within CCNA_00075at 79.795 kb on + strandat 79.832 kb on + strandat 79.840 kb on - strandat 79.853 kb on + strandat 79.861 kb on - strandat 79.884 kb on + strandat 79.918 kb on - strandat 79.930 kb on + strandat 79.930 kb on + strandat 80.006 kb on - strandat 80.050 kb on + strand, within CCNA_00076at 80.100 kb on + strand, within CCNA_00076at 80.143 kb on - strand, within CCNA_00076at 80.148 kb on + strand, within CCNA_00076at 80.159 kb on - strand, within CCNA_00076at 80.213 kb on + strand, within CCNA_00076at 80.254 kb on + strand, within CCNA_00076at 80.254 kb on + strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.270 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.294 kb on + strand, within CCNA_00076at 80.324 kb on - strandat 80.360 kb on - strandat 80.393 kb on - strandat 80.414 kb on + strandat 80.508 kb on - strand, within CCNA_00077at 80.508 kb on - strand, within CCNA_00077at 80.521 kb on + strand, within CCNA_00077at 80.529 kb on - strand, within CCNA_00077at 80.556 kb on + strandat 80.581 kb on + strand, within CCNA_00077at 80.589 kb on - strand, within CCNA_00077at 80.600 kb on - strand, within CCNA_00077at 80.608 kb on - strand, within CCNA_00077at 80.620 kb on + strand, within CCNA_00077at 80.673 kb on + strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.706 kb on + strand, within CCNA_00077at 80.727 kb on + strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.804 kb on - strand, within CCNA_00077at 80.812 kb on + strand, within CCNA_00077at 80.820 kb on - strandat 80.856 kb on - strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.866 kb on - strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.916 kb on + strand, within CCNA_00077at 80.955 kb on + strand, within CCNA_00077at 80.955 kb on + strand, within CCNA_00077at 80.963 kb on - strand, within CCNA_00077at 81.007 kb on + strand, within CCNA_00077at 81.009 kb on + strand, within CCNA_00077at 81.009 kb on + strand, within CCNA_00077at 81.017 kb on - strand, within CCNA_00077at 81.021 kb on + strand, within CCNA_00077at 81.029 kb on - strand, within CCNA_00077at 81.036 kb on + strand, within CCNA_00077at 81.051 kb on - strand, within CCNA_00077at 81.062 kb on - strand, within CCNA_00077at 81.098 kb on - strand, within CCNA_00077at 81.130 kb on + strand, within CCNA_00077at 81.142 kb on + strand, within CCNA_00077at 81.142 kb on + strand, within CCNA_00077at 81.152 kb on + strand, within CCNA_00077at 81.155 kb on - strand, within CCNA_00077at 81.166 kb on + strand, within CCNA_00077at 81.207 kb on - strand, within CCNA_00077at 81.207 kb on - strand, within CCNA_00077at 81.214 kb on + strand, within CCNA_00077at 81.214 kb on + strand, within CCNA_00077at 81.240 kb on - strand, within CCNA_00077at 81.245 kb on - strand, within CCNA_00077at 81.254 kb on - strand, within CCNA_00077at 81.290 kb on + strand, within CCNA_00077at 81.290 kb on + strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.337 kb on + strand, within CCNA_00077at 81.337 kb on + strandat 81.337 kb on + strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.345 kb on - strand, within CCNA_00077at 81.351 kb on + strand, within CCNA_00077

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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78,985 - CCNA_00075 0.23 +1.0
78,997 + CCNA_00075 0.24 +0.6
78,997 + CCNA_00075 0.24 -2.8
79,005 - CCNA_00075 0.25 -2.2
79,007 + CCNA_00075 0.25 -0.7
79,010 - CCNA_00075 0.25 -0.9
79,017 + CCNA_00075 0.26 +2.2
79,029 + CCNA_00075 0.27 -0.4
79,037 - CCNA_00075 0.28 -1.4
79,039 + CCNA_00075 0.28 -2.2
79,047 - CCNA_00075 0.29 -0.5
79,052 + CCNA_00075 0.29 +1.0
79,060 - CCNA_00075 0.30 +0.2
79,060 - CCNA_00075 0.30 -0.8
79,060 - CCNA_00075 0.30 +1.6
79,060 - CCNA_00075 0.30 +1.4
79,086 - CCNA_00075 0.32 -0.2
79,106 - CCNA_00075 0.33 +0.9
79,116 - CCNA_00075 0.34 +0.4
79,139 + CCNA_00075 0.36 -0.7
79,145 - CCNA_00075 0.37 +2.1
79,176 - CCNA_00075 0.39 +1.6
79,182 + CCNA_00075 0.40 +0.9
79,227 - CCNA_00075 0.43 +0.5
79,264 - CCNA_00075 0.47 -1.0
79,289 + CCNA_00075 0.49 -1.6
79,297 - CCNA_00075 0.49 +1.4
79,300 + CCNA_00075 0.50 +1.8
79,309 + CCNA_00075 0.50 -0.5
79,309 + CCNA_00075 0.50 +2.1
79,314 + CCNA_00075 0.51 +1.2
79,357 + CCNA_00075 0.54 -1.7
79,369 + CCNA_00075 0.55 +1.7
79,429 + CCNA_00075 0.60 +1.7
79,437 - CCNA_00075 0.61 +0.8
79,437 - CCNA_00075 0.61 +0.4
79,437 - CCNA_00075 0.61 +0.9
79,437 - CCNA_00075 0.61 -2.0
79,437 - CCNA_00075 0.61 +1.0
79,445 - CCNA_00075 0.62 -0.3
79,460 + CCNA_00075 0.63 -0.9
79,470 - CCNA_00075 0.64 +1.0
79,491 - CCNA_00075 0.65 -1.0
79,595 + CCNA_00075 0.74 +3.1
79,612 + CCNA_00075 0.75 -2.5
79,621 + CCNA_00075 0.76 +1.3
79,643 + CCNA_00075 0.78 +1.3
79,674 - CCNA_00075 0.81 +0.4
79,689 + CCNA_00075 0.82 -0.9
79,714 + CCNA_00075 0.84 -0.2
79,731 + CCNA_00075 0.85 -2.0
79,741 + CCNA_00075 0.86 +1.4
79,749 - CCNA_00075 0.87 -1.6
79,749 - CCNA_00075 0.87 -0.5
79,761 - CCNA_00075 0.88 -0.6
79,778 - CCNA_00075 0.89 +1.2
79,779 - CCNA_00075 0.89 -2.4
79,795 + -0.1
79,832 + +1.5
79,840 - +0.7
79,853 + +0.7
79,861 - +1.0
79,884 + -0.7
79,918 - +1.1
79,930 + -1.3
79,930 + +3.9
80,006 - +1.2
80,050 + CCNA_00076 0.20 +1.7
80,100 + CCNA_00076 0.33 +2.9
80,143 - CCNA_00076 0.44 +1.0
80,148 + CCNA_00076 0.45 +1.4
80,159 - CCNA_00076 0.48 +0.5
80,213 + CCNA_00076 0.62 -0.4
80,254 + CCNA_00076 0.73 +1.1
80,254 + CCNA_00076 0.73 +0.7
80,262 - CCNA_00076 0.75 -0.7
80,262 - CCNA_00076 0.75 +0.9
80,262 - CCNA_00076 0.75 +1.0
80,270 + CCNA_00076 0.77 -0.5
80,275 + CCNA_00076 0.78 +2.1
80,275 + CCNA_00076 0.78 +1.5
80,275 + CCNA_00076 0.78 +1.0
80,275 + CCNA_00076 0.78 +0.7
80,283 - CCNA_00076 0.80 -1.0
80,283 - CCNA_00076 0.80 +1.7
80,283 - CCNA_00076 0.80 -1.2
80,294 + CCNA_00076 0.83 +1.2
80,324 - +0.1
80,360 - -0.4
80,393 - +0.3
80,414 + -1.9
80,508 - CCNA_00077 0.13 +0.8
80,508 - CCNA_00077 0.13 +1.5
80,521 + CCNA_00077 0.14 -1.7
80,529 - CCNA_00077 0.15 -1.8
80,556 + +1.0
80,581 + CCNA_00077 0.19 -0.4
80,589 - CCNA_00077 0.20 -0.7
80,600 - CCNA_00077 0.21 -1.1
80,608 - CCNA_00077 0.22 +0.7
80,620 + CCNA_00077 0.23 +2.2
80,673 + CCNA_00077 0.27 -1.5
80,681 - CCNA_00077 0.28 +0.3
80,681 - CCNA_00077 0.28 -1.1
80,681 - CCNA_00077 0.28 -0.5
80,706 + CCNA_00077 0.30 +1.2
80,727 + CCNA_00077 0.32 +0.8
80,742 - CCNA_00077 0.33 +0.2
80,742 - CCNA_00077 0.33 +0.9
80,742 - CCNA_00077 0.33 -0.4
80,754 + CCNA_00077 0.34 -2.2
80,754 + CCNA_00077 0.34 +1.6
80,754 + CCNA_00077 0.34 +1.5
80,804 - CCNA_00077 0.38 -0.2
80,812 + CCNA_00077 0.39 -0.7
80,820 - +4.4
80,856 - CCNA_00077 0.43 +1.9
80,858 + CCNA_00077 0.43 -0.8
80,858 + CCNA_00077 0.43 -0.5
80,866 - CCNA_00077 0.43 -1.2
80,868 + CCNA_00077 0.44 -1.4
80,876 - CCNA_00077 0.44 +1.0
80,876 - CCNA_00077 0.44 +0.6
80,876 - CCNA_00077 0.44 +1.2
80,916 + CCNA_00077 0.48 -0.9
80,955 + CCNA_00077 0.51 -2.0
80,955 + CCNA_00077 0.51 -0.9
80,963 - CCNA_00077 0.52 +1.4
81,007 + CCNA_00077 0.55 +0.8
81,009 + CCNA_00077 0.56 -1.1
81,009 + CCNA_00077 0.56 +2.8
81,017 - CCNA_00077 0.56 +0.8
81,021 + CCNA_00077 0.57 -2.5
81,029 - CCNA_00077 0.57 +0.3
81,036 + CCNA_00077 0.58 -0.7
81,051 - CCNA_00077 0.59 +1.9
81,062 - CCNA_00077 0.60 +2.1
81,098 - CCNA_00077 0.63 -1.9
81,130 + CCNA_00077 0.66 +2.2
81,142 + CCNA_00077 0.67 -2.0
81,142 + CCNA_00077 0.67 +1.2
81,152 + CCNA_00077 0.68 -2.2
81,155 - CCNA_00077 0.68 -2.1
81,166 + CCNA_00077 0.69 +3.0
81,207 - CCNA_00077 0.72 +2.0
81,207 - CCNA_00077 0.72 -1.3
81,214 + CCNA_00077 0.73 +1.4
81,214 + CCNA_00077 0.73 +1.5
81,240 - CCNA_00077 0.75 -2.6
81,245 - CCNA_00077 0.76 +1.7
81,254 - CCNA_00077 0.76 +1.2
81,290 + CCNA_00077 0.80 +0.3
81,290 + CCNA_00077 0.80 -1.7
81,337 + CCNA_00077 0.84 +1.4
81,337 + CCNA_00077 0.84 -0.4
81,337 + CCNA_00077 0.84 -1.7
81,337 + +2.0
81,337 + CCNA_00077 0.84 +0.5
81,345 - CCNA_00077 0.84 +1.1
81,345 - CCNA_00077 0.84 +1.0
81,345 - CCNA_00077 0.84 +0.6
81,345 - CCNA_00077 0.84 -0.3
81,345 - CCNA_00077 0.84 +1.1
81,351 + CCNA_00077 0.85 +1.2

Or see this region's nucleotide sequence