Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04110

Experiment: R2A with perchlorate 12.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04105 and CA265_RS04110 are separated by 2 nucleotidesCA265_RS04110 and CA265_RS04115 are separated by 193 nucleotides CA265_RS04105: CA265_RS04105 - siroheme synthase, at 988,096 to 989,607 _RS04105 CA265_RS04110: CA265_RS04110 - phosphoadenosine phosphosulfate reductase, at 989,610 to 990,308 _RS04110 CA265_RS04115: CA265_RS04115 - sulfate adenylyltransferase, at 990,502 to 991,407 _RS04115 Position (kb) 989 990 991Strain fitness (log2 ratio) -1 0 1 2at 988.635 kb on + strand, within CA265_RS04105at 988.658 kb on + strand, within CA265_RS04105at 988.659 kb on - strand, within CA265_RS04105at 988.695 kb on + strand, within CA265_RS04105at 988.778 kb on + strand, within CA265_RS04105at 988.856 kb on + strand, within CA265_RS04105at 988.857 kb on - strand, within CA265_RS04105at 988.886 kb on + strand, within CA265_RS04105at 989.017 kb on - strand, within CA265_RS04105at 989.051 kb on + strand, within CA265_RS04105at 989.114 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.116 kb on - strand, within CA265_RS04105at 989.130 kb on - strand, within CA265_RS04105at 989.137 kb on + strand, within CA265_RS04105at 989.146 kb on + strand, within CA265_RS04105at 989.147 kb on - strand, within CA265_RS04105at 989.147 kb on - strand, within CA265_RS04105at 989.171 kb on - strand, within CA265_RS04105at 989.173 kb on - strand, within CA265_RS04105at 989.178 kb on - strand, within CA265_RS04105at 989.183 kb on + strand, within CA265_RS04105at 989.319 kb on - strand, within CA265_RS04105at 989.331 kb on - strand, within CA265_RS04105at 989.413 kb on - strand, within CA265_RS04105at 989.421 kb on + strand, within CA265_RS04105at 989.429 kb on + strand, within CA265_RS04105at 989.466 kb on + strandat 989.565 kb on - strandat 989.655 kb on - strandat 989.685 kb on - strand, within CA265_RS04110at 989.766 kb on - strand, within CA265_RS04110at 989.775 kb on - strand, within CA265_RS04110at 989.818 kb on - strand, within CA265_RS04110at 989.840 kb on - strand, within CA265_RS04110at 989.840 kb on - strand, within CA265_RS04110at 989.848 kb on - strand, within CA265_RS04110at 989.863 kb on - strand, within CA265_RS04110at 989.863 kb on - strand, within CA265_RS04110at 989.962 kb on - strand, within CA265_RS04110at 989.962 kb on - strand, within CA265_RS04110at 989.996 kb on - strand, within CA265_RS04110at 990.057 kb on - strand, within CA265_RS04110at 990.108 kb on - strand, within CA265_RS04110at 990.125 kb on - strand, within CA265_RS04110at 990.166 kb on - strand, within CA265_RS04110at 990.198 kb on - strand, within CA265_RS04110at 990.306 kb on + strandat 990.307 kb on - strandat 990.307 kb on - strandat 990.307 kb on - strandat 990.433 kb on + strandat 990.434 kb on - strandat 990.461 kb on - strandat 990.507 kb on + strandat 990.507 kb on + strandat 990.513 kb on + strandat 990.514 kb on - strandat 990.693 kb on + strand, within CA265_RS04115at 990.721 kb on - strand, within CA265_RS04115at 990.725 kb on - strand, within CA265_RS04115at 990.789 kb on - strand, within CA265_RS04115at 990.877 kb on + strand, within CA265_RS04115at 990.877 kb on + strand, within CA265_RS04115at 991.013 kb on - strand, within CA265_RS04115at 991.090 kb on + strand, within CA265_RS04115at 991.190 kb on + strand, within CA265_RS04115at 991.190 kb on + strand, within CA265_RS04115at 991.194 kb on + strand, within CA265_RS04115at 991.252 kb on - strand, within CA265_RS04115at 991.303 kb on - strand, within CA265_RS04115at 991.303 kb on - strand, within CA265_RS04115

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with perchlorate 12.5 mM
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988,635 + CA265_RS04105 0.36 +0.2
988,658 + CA265_RS04105 0.37 +0.7
988,659 - CA265_RS04105 0.37 +0.9
988,695 + CA265_RS04105 0.40 -0.7
988,778 + CA265_RS04105 0.45 +0.1
988,856 + CA265_RS04105 0.50 -0.0
988,857 - CA265_RS04105 0.50 +1.5
988,886 + CA265_RS04105 0.52 +0.4
989,017 - CA265_RS04105 0.61 +0.1
989,051 + CA265_RS04105 0.63 -0.7
989,114 - CA265_RS04105 0.67 -0.0
989,116 - CA265_RS04105 0.67 +0.7
989,116 - CA265_RS04105 0.67 -0.3
989,116 - CA265_RS04105 0.67 +0.2
989,116 - CA265_RS04105 0.67 +0.8
989,130 - CA265_RS04105 0.68 +1.3
989,137 + CA265_RS04105 0.69 +0.4
989,146 + CA265_RS04105 0.69 +0.2
989,147 - CA265_RS04105 0.70 -0.1
989,147 - CA265_RS04105 0.70 -0.5
989,171 - CA265_RS04105 0.71 +0.8
989,173 - CA265_RS04105 0.71 +0.9
989,178 - CA265_RS04105 0.72 +0.7
989,183 + CA265_RS04105 0.72 +0.3
989,319 - CA265_RS04105 0.81 +0.4
989,331 - CA265_RS04105 0.82 +0.2
989,413 - CA265_RS04105 0.87 +1.0
989,421 + CA265_RS04105 0.88 +0.7
989,429 + CA265_RS04105 0.88 +0.0
989,466 + +1.3
989,565 - +0.7
989,655 - +0.8
989,685 - CA265_RS04110 0.11 +0.6
989,766 - CA265_RS04110 0.22 +0.4
989,775 - CA265_RS04110 0.24 +0.2
989,818 - CA265_RS04110 0.30 +0.1
989,840 - CA265_RS04110 0.33 +0.7
989,840 - CA265_RS04110 0.33 -0.3
989,848 - CA265_RS04110 0.34 +0.5
989,863 - CA265_RS04110 0.36 +0.3
989,863 - CA265_RS04110 0.36 -0.2
989,962 - CA265_RS04110 0.50 +0.5
989,962 - CA265_RS04110 0.50 +0.5
989,996 - CA265_RS04110 0.55 +0.1
990,057 - CA265_RS04110 0.64 -0.9
990,108 - CA265_RS04110 0.71 +0.8
990,125 - CA265_RS04110 0.74 -1.4
990,166 - CA265_RS04110 0.80 +1.1
990,198 - CA265_RS04110 0.84 +0.5
990,306 + +0.0
990,307 - -0.8
990,307 - +0.1
990,307 - -0.3
990,433 + -0.8
990,434 - +0.4
990,461 - +0.4
990,507 + +0.6
990,507 + -0.1
990,513 + +2.0
990,514 - -0.1
990,693 + CA265_RS04115 0.21 +0.7
990,721 - CA265_RS04115 0.24 -0.3
990,725 - CA265_RS04115 0.25 -0.1
990,789 - CA265_RS04115 0.32 -0.4
990,877 + CA265_RS04115 0.41 +0.4
990,877 + CA265_RS04115 0.41 -0.2
991,013 - CA265_RS04115 0.56 -0.7
991,090 + CA265_RS04115 0.65 +0.3
991,190 + CA265_RS04115 0.76 -0.5
991,190 + CA265_RS04115 0.76 +0.2
991,194 + CA265_RS04115 0.76 +0.4
991,252 - CA265_RS04115 0.83 +0.8
991,303 - CA265_RS04115 0.88 +0.3
991,303 - CA265_RS04115 0.88 -0.2

Or see this region's nucleotide sequence