Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01800

Experiment: Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01795 and BPHYT_RS01800 are separated by 434 nucleotidesBPHYT_RS01800 and BPHYT_RS01810 are separated by 699 nucleotides BPHYT_RS01795: BPHYT_RS01795 - histidine kinase, at 407,907 to 408,785 _RS01795 BPHYT_RS01800: BPHYT_RS01800 - ferredoxin--NADP reductase, at 409,220 to 409,990 _RS01800 BPHYT_RS01810: BPHYT_RS01810 - sugar ABC transporter permease, at 410,690 to 411,649 _RS01810 Position (kb) 409 410Strain fitness (log2 ratio) -1 0 1 2at 408.779 kb on + strandat 408.779 kb on + strandat 408.780 kb on - strandat 408.780 kb on - strandat 408.780 kb on - strandat 408.950 kb on - strandat 409.007 kb on + strandat 409.007 kb on + strandat 409.008 kb on - strandat 409.009 kb on + strandat 409.009 kb on + strandat 409.010 kb on - strandat 409.018 kb on - strandat 409.018 kb on - strandat 409.054 kb on + strandat 410.033 kb on - strandat 410.210 kb on + strandat 410.211 kb on - strandat 410.381 kb on + strandat 410.568 kb on - strandat 410.793 kb on + strand, within BPHYT_RS01810

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM
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408,779 + +1.5
408,779 + +1.5
408,780 - +1.6
408,780 - +1.6
408,780 - +1.6
408,950 - +0.2
409,007 + +1.8
409,007 + +1.5
409,008 - +0.2
409,009 + +1.2
409,009 + +0.7
409,010 - +0.1
409,018 - -1.5
409,018 - -0.4
409,054 + +0.2
410,033 - +0.3
410,210 + +1.1
410,211 - +0.8
410,381 + +0.4
410,568 - -0.2
410,793 + BPHYT_RS01810 0.11 -0.1

Or see this region's nucleotide sequence