Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_26760

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_26750 and AO356_26755 are separated by 1 nucleotidesAO356_26755 and AO356_26760 overlap by 4 nucleotidesAO356_26760 and AO356_26765 are separated by 40 nucleotides AO356_26750: AO356_26750 - ABC transporter, at 6,090,569 to 6,092,410 _26750 AO356_26755: AO356_26755 - DNA-directed RNA polymerase subunit alpha, at 6,092,412 to 6,093,287 _26755 AO356_26760: AO356_26760 - ABC transporter permease, at 6,093,284 to 6,094,240 _26760 AO356_26765: AO356_26765 - ABC transporter substrate-binding protein, at 6,094,281 to 6,095,924 _26765 Position (kb) 6093 6094 6095Strain fitness (log2 ratio) -1 0 1at 6092.705 kb on - strand, within AO356_26755at 6092.743 kb on + strand, within AO356_26755at 6092.743 kb on + strand, within AO356_26755at 6092.803 kb on + strand, within AO356_26755at 6092.803 kb on + strand, within AO356_26755at 6093.082 kb on + strand, within AO356_26755at 6093.352 kb on - strandat 6093.352 kb on - strandat 6093.442 kb on - strand, within AO356_26760at 6093.484 kb on - strand, within AO356_26760at 6093.687 kb on + strand, within AO356_26760at 6093.688 kb on - strand, within AO356_26760at 6093.729 kb on + strand, within AO356_26760at 6093.729 kb on + strand, within AO356_26760at 6094.260 kb on - strandat 6094.315 kb on + strandat 6094.315 kb on + strandat 6094.316 kb on - strandat 6094.423 kb on - strandat 6094.444 kb on + strandat 6094.445 kb on - strandat 6095.002 kb on + strand, within AO356_26765at 6095.002 kb on + strand, within AO356_26765at 6095.002 kb on + strand, within AO356_26765at 6095.003 kb on - strand, within AO356_26765at 6095.003 kb on - strand, within AO356_26765at 6095.192 kb on + strand, within AO356_26765

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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6,092,705 - AO356_26755 0.33 +0.1
6,092,743 + AO356_26755 0.38 -1.2
6,092,743 + AO356_26755 0.38 +1.2
6,092,803 + AO356_26755 0.45 +0.7
6,092,803 + AO356_26755 0.45 +0.3
6,093,082 + AO356_26755 0.76 +1.2
6,093,352 - +0.4
6,093,352 - -0.6
6,093,442 - AO356_26760 0.17 -1.2
6,093,484 - AO356_26760 0.21 -0.8
6,093,687 + AO356_26760 0.42 +0.9
6,093,688 - AO356_26760 0.42 -0.7
6,093,729 + AO356_26760 0.46 -0.4
6,093,729 + AO356_26760 0.46 -0.4
6,094,260 - -0.8
6,094,315 + -0.1
6,094,315 + +0.5
6,094,316 - +0.8
6,094,423 - +0.5
6,094,444 + -0.1
6,094,445 - -1.0
6,095,002 + AO356_26765 0.44 +0.6
6,095,002 + AO356_26765 0.44 +0.6
6,095,002 + AO356_26765 0.44 +0.0
6,095,003 - AO356_26765 0.44 -0.7
6,095,003 - AO356_26765 0.44 +0.9
6,095,192 + AO356_26765 0.55 -0.2

Or see this region's nucleotide sequence