Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25060 and AO356_25065 overlap by 4 nucleotides AO356_25065 and AO356_25070 are separated by 179 nucleotides AO356_25070 and AO356_25075 are separated by 24 nucleotides
AO356_25060: AO356_25060 - protein nirF, at 5,675,798 to 5,676,976
_25060
AO356_25065: AO356_25065 - disulfide bond formation protein DsbD, at 5,676,973 to 5,677,302
_25065
AO356_25070: AO356_25070 - cytochrome C biogenesis protein CcsA, at 5,677,482 to 5,677,790
_25070
AO356_25075: AO356_25075 - nitrite reductase, at 5,677,815 to 5,679,494
_25075
Position (kb) 5676
5677
5678 Strain fitness (log2 ratio) -2
-1
0
1 at 5676.234 kb on + strand, within AO356_25060 at 5676.234 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.351 kb on + strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5676.352 kb on - strand, within AO356_25060 at 5677.161 kb on - strand, within AO356_25065 at 5677.323 kb on + strand at 5677.344 kb on + strand at 5677.345 kb on - strand at 5677.345 kb on - strand at 5677.442 kb on + strand at 5677.442 kb on + strand at 5677.442 kb on + strand at 5677.442 kb on + strand at 5677.442 kb on + strand at 5677.443 kb on - strand at 5677.443 kb on - strand at 5677.446 kb on + strand at 5677.446 kb on + strand at 5677.446 kb on + strand at 5677.446 kb on + strand at 5677.446 kb on + strand at 5677.447 kb on - strand at 5677.447 kb on - strand at 5677.447 kb on - strand at 5677.447 kb on - strand at 5677.487 kb on + strand at 5677.781 kb on + strand at 5677.781 kb on + strand at 5677.803 kb on + strand at 5677.819 kb on + strand at 5677.819 kb on + strand at 5677.819 kb on + strand at 5677.819 kb on + strand at 5677.820 kb on - strand at 5677.820 kb on - strand at 5677.820 kb on - strand at 5677.820 kb on - strand at 5677.840 kb on + strand at 5677.841 kb on - strand at 5677.841 kb on - strand at 5677.990 kb on + strand, within AO356_25075 at 5677.990 kb on + strand, within AO356_25075 at 5677.991 kb on - strand, within AO356_25075 at 5677.991 kb on - strand, within AO356_25075 at 5677.991 kb on - strand, within AO356_25075 at 5678.036 kb on - strand, within AO356_25075 at 5678.140 kb on + strand, within AO356_25075 at 5678.140 kb on + strand, within AO356_25075 at 5678.140 kb on + strand, within AO356_25075 at 5678.141 kb on - strand, within AO356_25075
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 5,676,234 + AO356_25060 0.37 -0.1 5,676,234 + AO356_25060 0.37 -1.3 5,676,351 + AO356_25060 0.47 +0.2 5,676,351 + AO356_25060 0.47 +1.3 5,676,351 + AO356_25060 0.47 -0.6 5,676,351 + AO356_25060 0.47 +0.7 5,676,351 + AO356_25060 0.47 +0.2 5,676,351 + AO356_25060 0.47 -0.1 5,676,352 - AO356_25060 0.47 -0.1 5,676,352 - AO356_25060 0.47 +0.8 5,676,352 - AO356_25060 0.47 +0.6 5,676,352 - AO356_25060 0.47 +0.2 5,676,352 - AO356_25060 0.47 +1.6 5,677,161 - AO356_25065 0.57 +0.3 5,677,323 + -0.8 5,677,344 + +0.6 5,677,345 - -0.8 5,677,345 - -0.3 5,677,442 + +1.2 5,677,442 + +0.1 5,677,442 + -0.6 5,677,442 + +0.2 5,677,442 + -0.9 5,677,443 - +0.3 5,677,443 - -0.2 5,677,446 + +0.3 5,677,446 + +0.1 5,677,446 + -0.7 5,677,446 + +0.0 5,677,446 + -0.1 5,677,447 - +0.5 5,677,447 - +0.2 5,677,447 - +0.5 5,677,447 - -0.6 5,677,487 + -0.2 5,677,781 + -1.4 5,677,781 + -0.0 5,677,803 + -0.5 5,677,819 + +0.2 5,677,819 + +0.2 5,677,819 + -0.6 5,677,819 + +0.0 5,677,820 - -1.1 5,677,820 - -0.3 5,677,820 - -0.8 5,677,820 - +1.3 5,677,840 + +0.3 5,677,841 - -0.7 5,677,841 - -2.3 5,677,990 + AO356_25075 0.10 +0.1 5,677,990 + AO356_25075 0.10 -0.2 5,677,991 - AO356_25075 0.10 -0.6 5,677,991 - AO356_25075 0.10 -0.4 5,677,991 - AO356_25075 0.10 -0.8 5,678,036 - AO356_25075 0.13 -0.2 5,678,140 + AO356_25075 0.19 -1.1 5,678,140 + AO356_25075 0.19 -0.3 5,678,140 + AO356_25075 0.19 +0.4 5,678,141 - AO356_25075 0.19 -0.7
Or see this region's nucleotide sequence