Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21060

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21050 and AO356_21055 are separated by 28 nucleotidesAO356_21055 and AO356_21060 are separated by 541 nucleotidesAO356_21060 and AO356_21065 are separated by 741 nucleotides AO356_21050: AO356_21050 - alpha/beta hydrolase, at 4,682,139 to 4,683,041 _21050 AO356_21055: AO356_21055 - hypothetical protein, at 4,683,070 to 4,683,447 _21055 AO356_21060: AO356_21060 - hypothetical protein, at 4,683,989 to 4,684,336 _21060 AO356_21065: AO356_21065 - hypothetical protein, at 4,685,078 to 4,688,668 _21065 Position (kb) 4683 4684 4685Strain fitness (log2 ratio) -1 0 1at 4683.092 kb on + strandat 4683.092 kb on + strandat 4683.092 kb on + strandat 4683.112 kb on - strand, within AO356_21055at 4683.112 kb on - strand, within AO356_21055at 4683.212 kb on + strand, within AO356_21055at 4683.213 kb on - strand, within AO356_21055at 4683.213 kb on - strand, within AO356_21055at 4683.359 kb on - strand, within AO356_21055at 4683.439 kb on - strandat 4683.439 kb on - strandat 4683.510 kb on + strandat 4683.511 kb on - strandat 4683.511 kb on - strandat 4683.555 kb on + strandat 4683.555 kb on + strandat 4683.555 kb on + strandat 4683.694 kb on - strandat 4683.815 kb on - strandat 4683.815 kb on - strandat 4683.815 kb on - strandat 4683.815 kb on - strandat 4683.815 kb on - strandat 4683.923 kb on - strandat 4683.923 kb on - strandat 4683.923 kb on - strandat 4684.393 kb on + strandat 4684.394 kb on - strandat 4684.398 kb on - strandat 4684.467 kb on - strandat 4684.467 kb on - strandat 4684.519 kb on + strandat 4684.520 kb on - strandat 4684.542 kb on - strandat 4684.581 kb on + strandat 4684.581 kb on + strandat 4684.623 kb on - strandat 4684.630 kb on - strandat 4684.637 kb on - strandat 4684.724 kb on + strandat 4684.724 kb on + strandat 4684.725 kb on - strandat 4684.779 kb on + strandat 4684.806 kb on + strandat 4684.806 kb on + strandat 4684.806 kb on + strandat 4684.806 kb on + strandat 4684.807 kb on - strandat 4684.807 kb on - strandat 4684.816 kb on + strandat 4684.817 kb on - strandat 4684.856 kb on + strandat 4684.856 kb on + strandat 4684.856 kb on + strandat 4684.981 kb on - strandat 4684.981 kb on - strandat 4685.022 kb on + strandat 4685.088 kb on + strandat 4685.088 kb on + strandat 4685.088 kb on + strandat 4685.088 kb on + strandat 4685.089 kb on - strandat 4685.091 kb on + strandat 4685.144 kb on + strandat 4685.144 kb on + strandat 4685.144 kb on + strandat 4685.145 kb on - strandat 4685.145 kb on - strandat 4685.145 kb on - strandat 4685.195 kb on - strandat 4685.275 kb on + strandat 4685.276 kb on - strandat 4685.279 kb on + strandat 4685.279 kb on + strandat 4685.279 kb on + strandat 4685.280 kb on - strandat 4685.280 kb on - strandat 4685.280 kb on - strandat 4685.280 kb on - strandat 4685.325 kb on + strandat 4685.325 kb on + strandat 4685.325 kb on + strandat 4685.326 kb on - strandat 4685.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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4,683,092 + -0.1
4,683,092 + +1.2
4,683,092 + -0.3
4,683,112 - AO356_21055 0.11 +0.3
4,683,112 - AO356_21055 0.11 +0.2
4,683,212 + AO356_21055 0.38 +0.2
4,683,213 - AO356_21055 0.38 -0.4
4,683,213 - AO356_21055 0.38 -1.7
4,683,359 - AO356_21055 0.76 -0.8
4,683,439 - +0.0
4,683,439 - +0.6
4,683,510 + +1.3
4,683,511 - +0.4
4,683,511 - -0.7
4,683,555 + -0.1
4,683,555 + -0.4
4,683,555 + +0.2
4,683,694 - +0.7
4,683,815 - +0.6
4,683,815 - -1.2
4,683,815 - -0.6
4,683,815 - +0.6
4,683,815 - -0.1
4,683,923 - +0.1
4,683,923 - -0.9
4,683,923 - +0.4
4,684,393 + +0.8
4,684,394 - -0.6
4,684,398 - -0.1
4,684,467 - -0.3
4,684,467 - +0.2
4,684,519 + +0.2
4,684,520 - +0.4
4,684,542 - +0.6
4,684,581 + -0.7
4,684,581 + +0.1
4,684,623 - +1.4
4,684,630 - +0.2
4,684,637 - +1.5
4,684,724 + +0.4
4,684,724 + +0.1
4,684,725 - +0.1
4,684,779 + +0.5
4,684,806 + -0.6
4,684,806 + +0.1
4,684,806 + +1.4
4,684,806 + +0.1
4,684,807 - +0.3
4,684,807 - +0.7
4,684,816 + +0.0
4,684,817 - -0.4
4,684,856 + -1.6
4,684,856 + -1.1
4,684,856 + +0.1
4,684,981 - -0.8
4,684,981 - +0.7
4,685,022 + +1.2
4,685,088 + +0.4
4,685,088 + -0.1
4,685,088 + -0.1
4,685,088 + +0.9
4,685,089 - +0.6
4,685,091 + +1.2
4,685,144 + -0.0
4,685,144 + +1.0
4,685,144 + -0.2
4,685,145 - +0.4
4,685,145 - -0.2
4,685,145 - -0.5
4,685,195 - +0.0
4,685,275 + +0.2
4,685,276 - -0.8
4,685,279 + +0.2
4,685,279 + +0.0
4,685,279 + +0.5
4,685,280 - +0.8
4,685,280 - -0.0
4,685,280 - -1.1
4,685,280 - +0.9
4,685,325 + -1.2
4,685,325 + +0.3
4,685,325 + +0.4
4,685,326 - -0.6
4,685,326 - +0.9

Or see this region's nucleotide sequence