Experiment: acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04200 and AO356_04205 are separated by 279 nucleotides AO356_04205 and AO356_04210 are separated by 234 nucleotides
AO356_04200: AO356_04200 - ShlB family hemolysin secretion/activation protein, at 953,488 to 955,194
_04200
AO356_04205: AO356_04205 - hypothetical protein, at 955,474 to 955,749
_04205
AO356_04210: AO356_04210 - RNA helicase, at 955,984 to 957,330
_04210
Position (kb) 955
956 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.550 kb on + strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.551 kb on - strand, within AO356_04200 at 954.707 kb on - strand, within AO356_04200 at 954.800 kb on + strand, within AO356_04200 at 954.800 kb on + strand, within AO356_04200 at 954.800 kb on + strand, within AO356_04200 at 954.801 kb on - strand, within AO356_04200 at 954.801 kb on - strand, within AO356_04200 at 954.833 kb on + strand, within AO356_04200 at 954.833 kb on + strand, within AO356_04200 at 954.833 kb on + strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.834 kb on - strand, within AO356_04200 at 954.896 kb on + strand, within AO356_04200 at 954.896 kb on + strand, within AO356_04200 at 954.897 kb on - strand, within AO356_04200 at 954.897 kb on - strand, within AO356_04200 at 954.897 kb on - strand, within AO356_04200 at 955.268 kb on + strand at 955.269 kb on - strand at 955.269 kb on - strand at 955.289 kb on + strand at 955.289 kb on + strand at 955.290 kb on - strand at 955.290 kb on - strand at 955.290 kb on - strand at 955.292 kb on + strand at 955.292 kb on + strand at 955.292 kb on + strand at 955.292 kb on + strand at 955.293 kb on - strand at 955.293 kb on - strand at 955.369 kb on + strand at 955.402 kb on - strand at 955.442 kb on - strand at 955.459 kb on + strand at 955.459 kb on + strand at 955.460 kb on - strand at 955.460 kb on - strand at 955.460 kb on - strand at 955.686 kb on + strand, within AO356_04205 at 955.686 kb on + strand, within AO356_04205 at 955.686 kb on + strand, within AO356_04205 at 955.789 kb on + strand at 955.789 kb on + strand at 955.790 kb on - strand at 955.790 kb on - strand at 955.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate (C) remove 954,550 + AO356_04200 0.62 +0.3 954,550 + AO356_04200 0.62 -0.0 954,550 + AO356_04200 0.62 +0.8 954,550 + AO356_04200 0.62 +1.0 954,550 + AO356_04200 0.62 -1.1 954,551 - AO356_04200 0.62 -0.3 954,551 - AO356_04200 0.62 -0.5 954,551 - AO356_04200 0.62 +0.3 954,551 - AO356_04200 0.62 +0.6 954,707 - AO356_04200 0.71 -0.5 954,800 + AO356_04200 0.77 -0.4 954,800 + AO356_04200 0.77 +0.3 954,800 + AO356_04200 0.77 +0.5 954,801 - AO356_04200 0.77 +0.2 954,801 - AO356_04200 0.77 -0.3 954,833 + AO356_04200 0.79 +0.0 954,833 + AO356_04200 0.79 +0.1 954,833 + AO356_04200 0.79 +0.6 954,834 - AO356_04200 0.79 +0.3 954,834 - AO356_04200 0.79 +0.4 954,834 - AO356_04200 0.79 +0.4 954,834 - AO356_04200 0.79 +0.6 954,834 - AO356_04200 0.79 +1.3 954,834 - AO356_04200 0.79 +0.3 954,896 + AO356_04200 0.82 +0.8 954,896 + AO356_04200 0.82 +0.5 954,897 - AO356_04200 0.83 -0.6 954,897 - AO356_04200 0.83 -1.2 954,897 - AO356_04200 0.83 -0.6 955,268 + -0.4 955,269 - -0.5 955,269 - -0.9 955,289 + -0.9 955,289 + -3.2 955,290 - +0.3 955,290 - +0.9 955,290 - -0.4 955,292 + +0.1 955,292 + +0.2 955,292 + +0.4 955,292 + -0.6 955,293 - -1.1 955,293 - +0.2 955,369 + +0.5 955,402 - -0.5 955,442 - -0.3 955,459 + +0.5 955,459 + +0.8 955,460 - -0.1 955,460 - -0.2 955,460 - -0.3 955,686 + AO356_04205 0.77 -0.7 955,686 + AO356_04205 0.77 -0.8 955,686 + AO356_04205 0.77 -0.8 955,789 + +0.2 955,789 + -0.1 955,790 - +1.3 955,790 - +0.0 955,790 - +1.4
Or see this region's nucleotide sequence