Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02780

Experiment: acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02770 and AO356_02775 overlap by 4 nucleotidesAO356_02775 and AO356_02780 overlap by 1 nucleotidesAO356_02780 and AO356_02785 are separated by 10 nucleotidesAO356_02785 and AO356_02790 are separated by 216 nucleotides AO356_02770: AO356_02770 - nitrite reductase, at 608,880 to 611,333 _02770 AO356_02775: AO356_02775 - nitrite reductase, at 611,330 to 611,647 _02775 AO356_02780: AO356_02780 - nitrate reductase, at 611,647 to 614,364 _02780 AO356_02785: AO356_02785 - uroporphyrin-III methyltransferase, at 614,375 to 615,130 _02785 AO356_02790: AO356_02790 - porin, at 615,347 to 616,381 _02790 Position (kb) 611 612 613 614 615Strain fitness (log2 ratio) -3 -2 -1 0 1at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.659 kb on + strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.660 kb on - strand, within AO356_02770at 610.666 kb on + strand, within AO356_02770at 610.666 kb on + strand, within AO356_02770at 610.667 kb on - strand, within AO356_02770at 610.667 kb on - strand, within AO356_02770at 610.697 kb on + strand, within AO356_02770at 610.698 kb on - strand, within AO356_02770at 610.773 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.995 kb on + strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 610.996 kb on - strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.076 kb on + strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.077 kb on - strand, within AO356_02770at 611.118 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.139 kb on + strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.140 kb on - strandat 611.368 kb on + strand, within AO356_02775at 611.680 kb on + strandat 611.681 kb on - strandat 611.959 kb on + strand, within AO356_02780at 611.959 kb on + strand, within AO356_02780at 611.959 kb on + strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.960 kb on - strand, within AO356_02780at 611.975 kb on + strand, within AO356_02780at 611.975 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.989 kb on + strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.990 kb on - strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.992 kb on + strand, within AO356_02780at 611.993 kb on - strand, within AO356_02780at 612.082 kb on + strand, within AO356_02780at 612.082 kb on + strand, within AO356_02780at 612.083 kb on - strand, within AO356_02780at 612.083 kb on - strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.121 kb on + strand, within AO356_02780at 612.122 kb on - strand, within AO356_02780at 612.122 kb on - strand, within AO356_02780at 612.165 kb on + strand, within AO356_02780at 612.165 kb on + strand, within AO356_02780at 612.166 kb on - strand, within AO356_02780at 612.430 kb on + strand, within AO356_02780at 612.431 kb on - strand, within AO356_02780at 613.032 kb on + strand, within AO356_02780at 613.032 kb on + strand, within AO356_02780at 613.033 kb on - strand, within AO356_02780at 613.033 kb on - strand, within AO356_02780at 613.186 kb on + strand, within AO356_02780at 613.186 kb on + strand, within AO356_02780at 613.187 kb on - strand, within AO356_02780at 613.187 kb on - strand, within AO356_02780at 613.309 kb on + strand, within AO356_02780at 613.310 kb on - strand, within AO356_02780at 613.310 kb on - strand, within AO356_02780at 613.979 kb on - strand, within AO356_02780at 614.265 kb on + strandat 614.265 kb on + strandat 614.266 kb on - strandat 614.356 kb on - strandat 614.375 kb on - strandat 614.375 kb on - strandat 614.424 kb on + strandat 614.424 kb on + strandat 614.424 kb on + strandat 614.425 kb on - strandat 614.425 kb on - strandat 614.425 kb on - strandat 614.425 kb on - strandat 614.821 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.873 kb on + strand, within AO356_02785at 614.874 kb on - strand, within AO356_02785at 614.874 kb on - strand, within AO356_02785at 615.196 kb on + strandat 615.197 kb on - strandat 615.316 kb on + strandat 615.345 kb on - strandat 615.348 kb on + strandat 615.349 kb on - strandat 615.349 kb on - strandat 615.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate (C)
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610,659 + AO356_02770 0.72 -0.9
610,659 + AO356_02770 0.72 -0.5
610,659 + AO356_02770 0.72 -1.9
610,659 + AO356_02770 0.72 -0.8
610,660 - AO356_02770 0.73 -0.6
610,660 - AO356_02770 0.73 -1.4
610,660 - AO356_02770 0.73 -0.8
610,666 + AO356_02770 0.73 +0.4
610,666 + AO356_02770 0.73 +0.0
610,667 - AO356_02770 0.73 -2.1
610,667 - AO356_02770 0.73 -0.8
610,697 + AO356_02770 0.74 -0.6
610,698 - AO356_02770 0.74 -0.9
610,773 + AO356_02770 0.77 +0.3
610,995 + AO356_02770 0.86 -0.3
610,995 + AO356_02770 0.86 -0.1
610,995 + AO356_02770 0.86 +0.9
610,995 + AO356_02770 0.86 +0.4
610,995 + AO356_02770 0.86 +0.7
610,996 - AO356_02770 0.86 -0.0
610,996 - AO356_02770 0.86 +0.2
610,996 - AO356_02770 0.86 -0.0
610,996 - AO356_02770 0.86 +0.4
610,996 - AO356_02770 0.86 +1.4
611,076 + AO356_02770 0.89 -0.2
611,076 + AO356_02770 0.89 -1.1
611,076 + AO356_02770 0.89 +0.1
611,076 + AO356_02770 0.89 +0.8
611,076 + AO356_02770 0.89 -1.3
611,076 + AO356_02770 0.89 -0.5
611,076 + AO356_02770 0.89 -0.1
611,077 - AO356_02770 0.90 -1.2
611,077 - AO356_02770 0.90 -0.9
611,077 - AO356_02770 0.90 +0.4
611,077 - AO356_02770 0.90 -0.1
611,118 + +0.2
611,139 + -0.8
611,139 + -0.9
611,139 + -1.5
611,139 + -0.1
611,139 + -0.1
611,139 + -0.9
611,139 + +0.6
611,139 + -0.3
611,139 + -0.1
611,139 + -0.1
611,139 + -0.9
611,140 - -0.4
611,140 - -0.0
611,140 - -0.3
611,140 - +0.2
611,140 - -0.0
611,140 - +0.2
611,140 - +0.6
611,140 - +0.1
611,140 - -0.1
611,140 - -0.5
611,368 + AO356_02775 0.12 -0.4
611,680 + +0.5
611,681 - +1.0
611,959 + AO356_02780 0.11 -0.3
611,959 + AO356_02780 0.11 -0.3
611,959 + AO356_02780 0.11 -0.9
611,960 - AO356_02780 0.12 +0.1
611,960 - AO356_02780 0.12 -0.0
611,960 - AO356_02780 0.12 +0.6
611,975 + AO356_02780 0.12 -0.9
611,975 + AO356_02780 0.12 -0.6
611,989 + AO356_02780 0.13 +0.4
611,989 + AO356_02780 0.13 -1.6
611,989 + AO356_02780 0.13 -0.3
611,990 - AO356_02780 0.13 -0.4
611,990 - AO356_02780 0.13 -1.4
611,990 - AO356_02780 0.13 +0.7
611,990 - AO356_02780 0.13 +0.1
611,990 - AO356_02780 0.13 -1.8
611,992 + AO356_02780 0.13 +1.4
611,992 + AO356_02780 0.13 -0.2
611,992 + AO356_02780 0.13 -0.4
611,992 + AO356_02780 0.13 +0.0
611,993 - AO356_02780 0.13 -0.5
612,082 + AO356_02780 0.16 +0.5
612,082 + AO356_02780 0.16 -2.6
612,083 - AO356_02780 0.16 -0.9
612,083 - AO356_02780 0.16 -0.9
612,121 + AO356_02780 0.17 -2.1
612,121 + AO356_02780 0.17 +0.5
612,121 + AO356_02780 0.17 -1.2
612,121 + AO356_02780 0.17 +0.4
612,122 - AO356_02780 0.17 +0.4
612,122 - AO356_02780 0.17 +0.6
612,165 + AO356_02780 0.19 -0.4
612,165 + AO356_02780 0.19 -3.1
612,166 - AO356_02780 0.19 -0.3
612,430 + AO356_02780 0.29 +0.7
612,431 - AO356_02780 0.29 -0.4
613,032 + AO356_02780 0.51 -0.7
613,032 + AO356_02780 0.51 +0.6
613,033 - AO356_02780 0.51 -0.9
613,033 - AO356_02780 0.51 -1.5
613,186 + AO356_02780 0.57 -1.0
613,186 + AO356_02780 0.57 +0.6
613,187 - AO356_02780 0.57 -0.4
613,187 - AO356_02780 0.57 -0.6
613,309 + AO356_02780 0.61 -0.0
613,310 - AO356_02780 0.61 -0.4
613,310 - AO356_02780 0.61 -0.8
613,979 - AO356_02780 0.86 -0.5
614,265 + -0.1
614,265 + +0.2
614,266 - -0.9
614,356 - -1.1
614,375 - -0.6
614,375 - -0.4
614,424 + -0.2
614,424 + +0.6
614,424 + +0.0
614,425 - -2.0
614,425 - -0.8
614,425 - -0.5
614,425 - -0.9
614,821 + AO356_02785 0.59 -1.8
614,873 + AO356_02785 0.66 +1.4
614,873 + AO356_02785 0.66 -0.6
614,873 + AO356_02785 0.66 +0.3
614,873 + AO356_02785 0.66 -1.0
614,874 - AO356_02785 0.66 -1.1
614,874 - AO356_02785 0.66 +0.1
615,196 + -0.4
615,197 - -1.1
615,316 + -1.4
615,345 - -1.4
615,348 + -1.1
615,349 - -1.7
615,349 - -1.4
615,353 - -1.7

Or see this region's nucleotide sequence