Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3553 and Psyr_RNA54 are separated by 44 nucleotides Psyr_RNA54 and Psyr_RNA55 are separated by 87 nucleotides Psyr_RNA55 and Psyr_RNA56 are separated by 109 nucleotides Psyr_RNA56 and Psyr_3554 are separated by 62 nucleotides Psyr_3554 and Psyr_3555 are separated by 169 nucleotides
Psyr_3553: Psyr_3553 - conserved hypothetical protein, at 4,232,381 to 4,232,872
_3553
Psyr_RNA54: Psyr_RNA54 - tRNA-Arg, at 4,232,917 to 4,232,993
_RNA54
Psyr_RNA55: Psyr_RNA55 - tRNA-Arg, at 4,233,081 to 4,233,157
_RNA55
Psyr_RNA56: Psyr_RNA56 - tRNA-Ser, at 4,233,267 to 4,233,357
_RNA56
Psyr_3554: Psyr_3554 - Carbon storage regulator, at 4,233,420 to 4,233,608
_3554
Psyr_3555: Psyr_3555 - aspartate kinase, at 4,233,778 to 4,235,010
_3555
Position (kb) 4233
4234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4232.311 kb on + strand at 4232.312 kb on - strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.400 kb on + strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.401 kb on - strand at 4232.485 kb on + strand, within Psyr_3553 at 4232.486 kb on - strand, within Psyr_3553 at 4232.486 kb on - strand, within Psyr_3553 at 4232.486 kb on - strand, within Psyr_3553 at 4232.492 kb on - strand, within Psyr_3553 at 4232.596 kb on + strand, within Psyr_3553 at 4232.596 kb on + strand, within Psyr_3553 at 4232.796 kb on - strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.801 kb on + strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.802 kb on - strand, within Psyr_3553 at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.916 kb on - strand at 4232.967 kb on + strand, within Psyr_RNA54 at 4232.986 kb on - strand at 4233.050 kb on - strand at 4233.058 kb on - strand at 4233.078 kb on - strand at 4233.078 kb on - strand at 4233.261 kb on - strand at 4233.261 kb on - strand at 4233.265 kb on - strand at 4233.265 kb on - strand at 4233.464 kb on - strand, within Psyr_3554 at 4233.513 kb on - strand, within Psyr_3554 at 4233.608 kb on + strand at 4233.609 kb on - strand at 4233.609 kb on - strand at 4233.609 kb on - strand at 4233.653 kb on + strand at 4233.653 kb on + strand at 4233.653 kb on + strand at 4233.653 kb on + strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.654 kb on - strand at 4233.688 kb on + strand at 4233.689 kb on - strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.694 kb on + strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4233.695 kb on - strand at 4234.291 kb on - strand, within Psyr_3555 at 4234.291 kb on - strand, within Psyr_3555 at 4234.291 kb on - strand, within Psyr_3555 at 4234.291 kb on - strand, within Psyr_3555
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 4,232,311 + +1.8 4,232,312 - -1.1 4,232,400 + -1.1 4,232,400 + -1.0 4,232,400 + -0.4 4,232,400 + +0.0 4,232,400 + +0.8 4,232,400 + +0.4 4,232,400 + +0.3 4,232,400 + +0.5 4,232,400 + -0.9 4,232,401 - -2.9 4,232,401 - -0.8 4,232,401 - -0.6 4,232,401 - -1.3 4,232,485 + Psyr_3553 0.21 +0.8 4,232,486 - Psyr_3553 0.21 -1.4 4,232,486 - Psyr_3553 0.21 -1.0 4,232,486 - Psyr_3553 0.21 +1.2 4,232,492 - Psyr_3553 0.23 -2.5 4,232,596 + Psyr_3553 0.44 +0.8 4,232,596 + Psyr_3553 0.44 +0.9 4,232,796 - Psyr_3553 0.84 -0.7 4,232,801 + Psyr_3553 0.85 -2.8 4,232,801 + Psyr_3553 0.85 +0.4 4,232,802 - Psyr_3553 0.86 +0.8 4,232,802 - Psyr_3553 0.86 -0.7 4,232,802 - Psyr_3553 0.86 +2.5 4,232,802 - Psyr_3553 0.86 -0.8 4,232,802 - Psyr_3553 0.86 -1.0 4,232,916 - +0.2 4,232,916 - +0.1 4,232,916 - -1.1 4,232,916 - -2.1 4,232,967 + Psyr_RNA54 0.65 +2.2 4,232,986 - +1.8 4,233,050 - -1.6 4,233,058 - +0.2 4,233,078 - +0.2 4,233,078 - +1.2 4,233,261 - +4.3 4,233,261 - +1.2 4,233,265 - +0.6 4,233,265 - +0.2 4,233,464 - Psyr_3554 0.23 +1.8 4,233,513 - Psyr_3554 0.49 +0.7 4,233,608 + -1.4 4,233,609 - +0.2 4,233,609 - +0.2 4,233,609 - +0.1 4,233,653 + -0.6 4,233,653 + +0.6 4,233,653 + -0.0 4,233,653 + -1.3 4,233,654 - +0.9 4,233,654 - +0.8 4,233,654 - +1.0 4,233,654 - +0.2 4,233,654 - -1.0 4,233,654 - -0.8 4,233,654 - +0.4 4,233,688 + -1.4 4,233,689 - -0.1 4,233,694 + -0.6 4,233,694 + +0.2 4,233,694 + -0.6 4,233,694 + -0.9 4,233,695 - -0.5 4,233,695 - +0.9 4,233,695 - -0.7 4,233,695 - +0.0 4,233,695 - +0.2 4,233,695 - +0.2 4,233,695 - -0.8 4,234,291 - Psyr_3555 0.42 +1.4 4,234,291 - Psyr_3555 0.42 +1.2 4,234,291 - Psyr_3555 0.42 +1.2 4,234,291 - Psyr_3555 0.42 +0.2
Or see this region's nucleotide sequence