Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5044 and Psyr_5045 are separated by 24 nucleotides Psyr_5045 and Psyr_5046 are separated by 83 nucleotides Psyr_5046 and Psyr_5047 are separated by 336 nucleotides
Psyr_5044: Psyr_5044 - Aldose 1-epimerase, at 5,986,112 to 5,987,023
_5044
Psyr_5045: Psyr_5045 - conserved hypothetical protein, at 5,987,048 to 5,987,590
_5045
Psyr_5046: Psyr_5046 - Transglycosylase-associated protein, at 5,987,674 to 5,987,919
_5046
Psyr_5047: Psyr_5047 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 5,988,256 to 5,989,338
_5047
Position (kb) 5987
5988 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5986.078 kb on + strand at 5986.078 kb on + strand at 5986.079 kb on - strand at 5986.079 kb on - strand at 5986.177 kb on + strand at 5986.177 kb on + strand at 5986.177 kb on + strand at 5986.178 kb on - strand at 5986.178 kb on - strand at 5986.178 kb on - strand at 5986.178 kb on - strand at 5986.236 kb on - strand, within Psyr_5044 at 5986.236 kb on - strand, within Psyr_5044 at 5986.236 kb on - strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.583 kb on + strand, within Psyr_5044 at 5986.584 kb on - strand, within Psyr_5044 at 5986.605 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.631 kb on + strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.632 kb on - strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.650 kb on + strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.651 kb on - strand, within Psyr_5044 at 5986.688 kb on + strand, within Psyr_5044 at 5986.688 kb on + strand, within Psyr_5044 at 5986.688 kb on + strand, within Psyr_5044 at 5986.688 kb on + strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.689 kb on - strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.766 kb on + strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5986.767 kb on - strand, within Psyr_5044 at 5987.002 kb on + strand at 5987.002 kb on + strand at 5987.002 kb on + strand at 5987.002 kb on + strand at 5987.033 kb on - strand at 5987.097 kb on + strand at 5987.119 kb on + strand, within Psyr_5045 at 5987.150 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.166 kb on + strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.167 kb on - strand, within Psyr_5045 at 5987.170 kb on + strand, within Psyr_5045 at 5987.170 kb on + strand, within Psyr_5045 at 5987.170 kb on + strand, within Psyr_5045 at 5987.170 kb on + strand, within Psyr_5045 at 5987.170 kb on + strand, within Psyr_5045 at 5987.171 kb on - strand, within Psyr_5045 at 5987.171 kb on - strand, within Psyr_5045 at 5987.171 kb on - strand, within Psyr_5045 at 5987.278 kb on + strand, within Psyr_5045 at 5987.278 kb on + strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.279 kb on - strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.370 kb on + strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.371 kb on - strand, within Psyr_5045 at 5987.593 kb on + strand at 5987.593 kb on + strand at 5987.594 kb on - strand at 5987.631 kb on + strand at 5987.631 kb on + strand at 5987.632 kb on - strand at 5987.649 kb on - strand at 5987.649 kb on - strand at 5987.649 kb on - strand at 5987.668 kb on + strand at 5987.676 kb on - strand at 5987.676 kb on - strand at 5987.676 kb on - strand at 5987.676 kb on - strand at 5987.696 kb on + strand at 5987.696 kb on + strand at 5987.696 kb on + strand at 5987.697 kb on - strand at 5987.697 kb on - strand at 5987.722 kb on + strand, within Psyr_5046 at 5987.722 kb on + strand, within Psyr_5046 at 5987.723 kb on - strand, within Psyr_5046 at 5987.723 kb on - strand, within Psyr_5046 at 5987.723 kb on - strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.786 kb on + strand, within Psyr_5046 at 5987.787 kb on - strand, within Psyr_5046 at 5987.787 kb on - strand, within Psyr_5046 at 5987.787 kb on - strand, within Psyr_5046 at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.934 kb on + strand at 5987.935 kb on - strand at 5987.935 kb on - strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.937 kb on + strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.938 kb on - strand at 5987.945 kb on + strand at 5987.945 kb on + strand at 5987.946 kb on - strand at 5987.957 kb on - strand at 5987.957 kb on - strand at 5987.959 kb on + strand at 5987.959 kb on + strand at 5987.960 kb on - strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.973 kb on + strand at 5987.974 kb on - strand at 5987.974 kb on - strand at 5987.974 kb on - strand at 5987.974 kb on - strand at 5987.979 kb on + strand at 5987.980 kb on - strand at 5987.980 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.118 kb on - strand at 5988.277 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 5,986,078 + -0.4 5,986,078 + +0.8 5,986,079 - +1.2 5,986,079 - -0.2 5,986,177 + +0.5 5,986,177 + -1.3 5,986,177 + -0.1 5,986,178 - -0.5 5,986,178 - +1.5 5,986,178 - +1.1 5,986,178 - +0.0 5,986,236 - Psyr_5044 0.14 +0.3 5,986,236 - Psyr_5044 0.14 -0.2 5,986,236 - Psyr_5044 0.14 -0.5 5,986,583 + Psyr_5044 0.52 -0.3 5,986,583 + Psyr_5044 0.52 +1.5 5,986,583 + Psyr_5044 0.52 +0.7 5,986,583 + Psyr_5044 0.52 -1.3 5,986,584 - Psyr_5044 0.52 -0.1 5,986,605 + Psyr_5044 0.54 -1.1 5,986,631 + Psyr_5044 0.57 -1.5 5,986,631 + Psyr_5044 0.57 -0.9 5,986,631 + Psyr_5044 0.57 -0.9 5,986,631 + Psyr_5044 0.57 -0.6 5,986,631 + Psyr_5044 0.57 +0.7 5,986,631 + Psyr_5044 0.57 +1.5 5,986,632 - Psyr_5044 0.57 -1.3 5,986,632 - Psyr_5044 0.57 -0.5 5,986,632 - Psyr_5044 0.57 -0.3 5,986,632 - Psyr_5044 0.57 +0.5 5,986,632 - Psyr_5044 0.57 -0.5 5,986,650 + Psyr_5044 0.59 +0.9 5,986,650 + Psyr_5044 0.59 +0.1 5,986,650 + Psyr_5044 0.59 -0.1 5,986,650 + Psyr_5044 0.59 +0.1 5,986,650 + Psyr_5044 0.59 -0.1 5,986,650 + Psyr_5044 0.59 +0.2 5,986,651 - Psyr_5044 0.59 +0.5 5,986,651 - Psyr_5044 0.59 -0.1 5,986,651 - Psyr_5044 0.59 +0.1 5,986,651 - Psyr_5044 0.59 +0.2 5,986,651 - Psyr_5044 0.59 +1.4 5,986,651 - Psyr_5044 0.59 -1.6 5,986,688 + Psyr_5044 0.63 -0.0 5,986,688 + Psyr_5044 0.63 -0.5 5,986,688 + Psyr_5044 0.63 +1.3 5,986,688 + Psyr_5044 0.63 +0.3 5,986,689 - Psyr_5044 0.63 +0.4 5,986,689 - Psyr_5044 0.63 -0.7 5,986,689 - Psyr_5044 0.63 +1.0 5,986,689 - Psyr_5044 0.63 +0.5 5,986,689 - Psyr_5044 0.63 -0.3 5,986,766 + Psyr_5044 0.72 +0.2 5,986,766 + Psyr_5044 0.72 -0.1 5,986,766 + Psyr_5044 0.72 -1.0 5,986,766 + Psyr_5044 0.72 -0.5 5,986,766 + Psyr_5044 0.72 -0.2 5,986,766 + Psyr_5044 0.72 -0.5 5,986,766 + Psyr_5044 0.72 -0.4 5,986,766 + Psyr_5044 0.72 +0.6 5,986,767 - Psyr_5044 0.72 +0.5 5,986,767 - Psyr_5044 0.72 -0.8 5,986,767 - Psyr_5044 0.72 -0.2 5,986,767 - Psyr_5044 0.72 +0.9 5,986,767 - Psyr_5044 0.72 -0.1 5,986,767 - Psyr_5044 0.72 +0.5 5,986,767 - Psyr_5044 0.72 +0.5 5,987,002 + -0.0 5,987,002 + +0.4 5,987,002 + +0.4 5,987,002 + +0.9 5,987,033 - +1.0 5,987,097 + -2.9 5,987,119 + Psyr_5045 0.13 +0.1 5,987,150 + Psyr_5045 0.19 -1.0 5,987,166 + Psyr_5045 0.22 -1.8 5,987,166 + Psyr_5045 0.22 +3.1 5,987,166 + Psyr_5045 0.22 -1.1 5,987,166 + Psyr_5045 0.22 -0.3 5,987,166 + Psyr_5045 0.22 -2.1 5,987,166 + Psyr_5045 0.22 +1.3 5,987,166 + Psyr_5045 0.22 -2.5 5,987,166 + Psyr_5045 0.22 -0.4 5,987,166 + Psyr_5045 0.22 -0.8 5,987,166 + Psyr_5045 0.22 -0.3 5,987,166 + Psyr_5045 0.22 -1.5 5,987,166 + Psyr_5045 0.22 -0.3 5,987,166 + Psyr_5045 0.22 -1.6 5,987,167 - Psyr_5045 0.22 -0.8 5,987,167 - Psyr_5045 0.22 -1.3 5,987,167 - Psyr_5045 0.22 +0.2 5,987,167 - Psyr_5045 0.22 -1.2 5,987,167 - Psyr_5045 0.22 -2.1 5,987,167 - Psyr_5045 0.22 +0.3 5,987,167 - Psyr_5045 0.22 -0.1 5,987,167 - Psyr_5045 0.22 -0.5 5,987,167 - Psyr_5045 0.22 -1.1 5,987,167 - Psyr_5045 0.22 -0.7 5,987,167 - Psyr_5045 0.22 -0.3 5,987,167 - Psyr_5045 0.22 -1.4 5,987,167 - Psyr_5045 0.22 -1.1 5,987,167 - Psyr_5045 0.22 -0.6 5,987,167 - Psyr_5045 0.22 -0.5 5,987,167 - Psyr_5045 0.22 -0.6 5,987,167 - Psyr_5045 0.22 -1.6 5,987,167 - Psyr_5045 0.22 -2.2 5,987,167 - Psyr_5045 0.22 +0.7 5,987,167 - Psyr_5045 0.22 +0.0 5,987,170 + Psyr_5045 0.22 -1.2 5,987,170 + Psyr_5045 0.22 +0.9 5,987,170 + Psyr_5045 0.22 +0.2 5,987,170 + Psyr_5045 0.22 -1.2 5,987,170 + Psyr_5045 0.22 -2.4 5,987,171 - Psyr_5045 0.23 -1.2 5,987,171 - Psyr_5045 0.23 -2.2 5,987,171 - Psyr_5045 0.23 +0.3 5,987,278 + Psyr_5045 0.42 -0.7 5,987,278 + Psyr_5045 0.42 -0.6 5,987,279 - Psyr_5045 0.43 +1.3 5,987,279 - Psyr_5045 0.43 -1.1 5,987,279 - Psyr_5045 0.43 +3.5 5,987,279 - Psyr_5045 0.43 -0.5 5,987,279 - Psyr_5045 0.43 -0.7 5,987,370 + Psyr_5045 0.59 +0.1 5,987,370 + Psyr_5045 0.59 +0.9 5,987,370 + Psyr_5045 0.59 +0.0 5,987,370 + Psyr_5045 0.59 -2.1 5,987,370 + Psyr_5045 0.59 -1.1 5,987,370 + Psyr_5045 0.59 -0.5 5,987,370 + Psyr_5045 0.59 +0.5 5,987,370 + Psyr_5045 0.59 -1.2 5,987,370 + Psyr_5045 0.59 -0.2 5,987,370 + Psyr_5045 0.59 -2.1 5,987,370 + Psyr_5045 0.59 -0.8 5,987,370 + Psyr_5045 0.59 -2.1 5,987,370 + Psyr_5045 0.59 +0.5 5,987,371 - Psyr_5045 0.59 -2.5 5,987,371 - Psyr_5045 0.59 -1.2 5,987,371 - Psyr_5045 0.59 -1.3 5,987,371 - Psyr_5045 0.59 -0.9 5,987,371 - Psyr_5045 0.59 -1.2 5,987,371 - Psyr_5045 0.59 -1.1 5,987,371 - Psyr_5045 0.59 -0.6 5,987,371 - Psyr_5045 0.59 -0.5 5,987,371 - Psyr_5045 0.59 -1.8 5,987,371 - Psyr_5045 0.59 +0.5 5,987,593 + -1.5 5,987,593 + -0.2 5,987,594 - -0.2 5,987,631 + -1.3 5,987,631 + -0.2 5,987,632 - +1.4 5,987,649 - -2.1 5,987,649 - +0.5 5,987,649 - -1.1 5,987,668 + +2.0 5,987,676 - -1.8 5,987,676 - -0.3 5,987,676 - -1.0 5,987,676 - -1.5 5,987,696 + -0.5 5,987,696 + +1.0 5,987,696 + -2.3 5,987,697 - -0.2 5,987,697 - -1.2 5,987,722 + Psyr_5046 0.20 -0.0 5,987,722 + Psyr_5046 0.20 -0.8 5,987,723 - Psyr_5046 0.20 +0.7 5,987,723 - Psyr_5046 0.20 +1.1 5,987,723 - Psyr_5046 0.20 -0.7 5,987,786 + Psyr_5046 0.46 -0.1 5,987,786 + Psyr_5046 0.46 +0.1 5,987,786 + Psyr_5046 0.46 -0.2 5,987,786 + Psyr_5046 0.46 -0.7 5,987,786 + Psyr_5046 0.46 -0.7 5,987,786 + Psyr_5046 0.46 -0.5 5,987,786 + Psyr_5046 0.46 -0.8 5,987,787 - Psyr_5046 0.46 -0.8 5,987,787 - Psyr_5046 0.46 +0.7 5,987,787 - Psyr_5046 0.46 +1.4 5,987,934 + +1.7 5,987,934 + +1.0 5,987,934 + -0.1 5,987,934 + -0.0 5,987,934 + -0.5 5,987,934 + +0.1 5,987,935 - +0.3 5,987,935 - +2.1 5,987,937 + -1.2 5,987,937 + +0.5 5,987,937 + -0.3 5,987,937 + +0.7 5,987,937 + -0.2 5,987,937 + -0.9 5,987,937 + -1.8 5,987,937 + +0.9 5,987,937 + -1.1 5,987,937 + -0.8 5,987,938 - -0.2 5,987,938 - -0.8 5,987,938 - -1.2 5,987,938 - -1.8 5,987,938 - +0.5 5,987,938 - +0.2 5,987,945 + -0.1 5,987,945 + -1.1 5,987,946 - +0.5 5,987,957 - -0.6 5,987,957 - -0.2 5,987,959 + +0.4 5,987,959 + +0.1 5,987,960 - +0.3 5,987,973 + -1.1 5,987,973 + -0.9 5,987,973 + +1.4 5,987,973 + -0.9 5,987,973 + +0.3 5,987,973 + -0.2 5,987,973 + +0.3 5,987,973 + -0.1 5,987,973 + +0.5 5,987,973 + -0.5 5,987,973 + +0.8 5,987,974 - +0.5 5,987,974 - +1.4 5,987,974 - -0.7 5,987,974 - -1.3 5,987,979 + +0.3 5,987,980 - +0.3 5,987,980 - +1.1 5,988,118 - -0.4 5,988,118 - -1.2 5,988,118 - -1.8 5,988,118 - -0.2 5,988,118 - -0.8 5,988,277 + -0.7
Or see this region's nucleotide sequence