Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5034

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_5033 and Psyr_5034 are separated by 99 nucleotidesPsyr_5034 and Psyr_5035 are separated by 170 nucleotides Psyr_5033: Psyr_5033 - PAS/PAC sensor signal transduction histidine kinase, at 5,971,772 to 5,973,094 _5033 Psyr_5034: Psyr_5034 - CBS:Protein of unknown function DUF21:Transporter-associated region, at 5,973,194 to 5,974,534 _5034 Psyr_5035: Psyr_5035 - Peptidase M23B, at 5,974,705 to 5,975,607 _5035 Position (kb) 5973 5974 5975Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.234 kb on + strand, within Psyr_5033at 5972.253 kb on - strand, within Psyr_5033at 5972.253 kb on - strand, within Psyr_5033at 5972.359 kb on - strand, within Psyr_5033at 5972.359 kb on - strand, within Psyr_5033at 5972.450 kb on + strand, within Psyr_5033at 5972.592 kb on - strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.777 kb on + strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.778 kb on - strand, within Psyr_5033at 5972.903 kb on + strand, within Psyr_5033at 5973.034 kb on + strandat 5973.090 kb on - strandat 5973.090 kb on - strandat 5973.090 kb on - strandat 5973.090 kb on - strandat 5973.092 kb on + strandat 5973.092 kb on + strandat 5973.092 kb on + strandat 5973.093 kb on - strandat 5973.132 kb on - strandat 5973.132 kb on - strandat 5973.169 kb on - strandat 5973.169 kb on - strandat 5973.171 kb on + strandat 5973.171 kb on + strandat 5973.172 kb on - strandat 5973.209 kb on - strandat 5973.572 kb on + strand, within Psyr_5034at 5973.572 kb on + strand, within Psyr_5034at 5973.573 kb on - strand, within Psyr_5034at 5973.662 kb on + strand, within Psyr_5034at 5973.662 kb on + strand, within Psyr_5034at 5973.662 kb on + strand, within Psyr_5034at 5973.662 kb on + strand, within Psyr_5034at 5973.663 kb on - strand, within Psyr_5034at 5973.663 kb on - strand, within Psyr_5034at 5973.663 kb on - strand, within Psyr_5034at 5973.663 kb on - strand, within Psyr_5034at 5973.663 kb on - strand, within Psyr_5034at 5973.672 kb on - strand, within Psyr_5034at 5973.672 kb on - strand, within Psyr_5034at 5973.672 kb on - strand, within Psyr_5034at 5973.695 kb on + strand, within Psyr_5034at 5973.695 kb on + strand, within Psyr_5034at 5973.695 kb on + strand, within Psyr_5034at 5973.695 kb on + strand, within Psyr_5034at 5973.696 kb on - strand, within Psyr_5034at 5973.696 kb on - strand, within Psyr_5034at 5973.696 kb on - strand, within Psyr_5034at 5973.696 kb on - strand, within Psyr_5034at 5973.696 kb on - strand, within Psyr_5034at 5973.773 kb on + strand, within Psyr_5034at 5973.774 kb on - strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.992 kb on + strand, within Psyr_5034at 5973.993 kb on - strand, within Psyr_5034at 5973.993 kb on - strand, within Psyr_5034at 5973.993 kb on - strand, within Psyr_5034at 5974.218 kb on - strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.281 kb on + strand, within Psyr_5034at 5974.282 kb on - strandat 5974.282 kb on - strand, within Psyr_5034at 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.412 kb on + strandat 5974.413 kb on - strandat 5974.413 kb on - strandat 5974.688 kb on + strandat 5974.688 kb on + strandat 5974.688 kb on + strandat 5974.688 kb on + strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5974.689 kb on - strandat 5975.099 kb on + strand, within Psyr_5035at 5975.099 kb on + strand, within Psyr_5035at 5975.100 kb on - strand, within Psyr_5035at 5975.100 kb on - strand, within Psyr_5035at 5975.162 kb on + strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.163 kb on - strand, within Psyr_5035at 5975.216 kb on + strand, within Psyr_5035at 5975.216 kb on + strand, within Psyr_5035at 5975.216 kb on + strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.217 kb on - strand, within Psyr_5035at 5975.369 kb on + strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.370 kb on - strand, within Psyr_5035at 5975.387 kb on + strand, within Psyr_5035at 5975.387 kb on + strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.388 kb on - strand, within Psyr_5035at 5975.398 kb on + strand, within Psyr_5035at 5975.398 kb on + strand, within Psyr_5035at 5975.399 kb on - strand, within Psyr_5035at 5975.399 kb on - strand, within Psyr_5035

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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5,972,234 + Psyr_5033 0.35 +0.5
5,972,234 + Psyr_5033 0.35 +0.1
5,972,234 + Psyr_5033 0.35 +1.5
5,972,234 + Psyr_5033 0.35 +0.4
5,972,234 + Psyr_5033 0.35 +0.4
5,972,234 + Psyr_5033 0.35 -0.3
5,972,234 + Psyr_5033 0.35 -0.5
5,972,253 - Psyr_5033 0.36 -0.3
5,972,253 - Psyr_5033 0.36 -0.1
5,972,359 - Psyr_5033 0.44 +0.3
5,972,359 - Psyr_5033 0.44 +0.2
5,972,450 + Psyr_5033 0.51 -0.4
5,972,592 - Psyr_5033 0.62 -0.2
5,972,777 + Psyr_5033 0.76 +1.5
5,972,777 + Psyr_5033 0.76 +0.6
5,972,777 + Psyr_5033 0.76 -0.5
5,972,777 + Psyr_5033 0.76 +0.8
5,972,777 + Psyr_5033 0.76 -1.2
5,972,777 + Psyr_5033 0.76 +0.8
5,972,777 + Psyr_5033 0.76 +0.3
5,972,778 - Psyr_5033 0.76 -1.2
5,972,778 - Psyr_5033 0.76 -1.7
5,972,778 - Psyr_5033 0.76 -1.8
5,972,778 - Psyr_5033 0.76 -1.8
5,972,778 - Psyr_5033 0.76 +0.5
5,972,778 - Psyr_5033 0.76 -0.7
5,972,778 - Psyr_5033 0.76 -0.0
5,972,778 - Psyr_5033 0.76 +0.1
5,972,778 - Psyr_5033 0.76 -0.2
5,972,778 - Psyr_5033 0.76 -1.1
5,972,903 + Psyr_5033 0.85 +0.6
5,973,034 + +0.3
5,973,090 - -1.4
5,973,090 - -0.5
5,973,090 - -0.8
5,973,090 - -0.1
5,973,092 + -0.7
5,973,092 + -0.6
5,973,092 + +1.5
5,973,093 - +0.0
5,973,132 - -1.3
5,973,132 - -2.1
5,973,169 - -1.1
5,973,169 - +0.2
5,973,171 + -1.6
5,973,171 + +2.5
5,973,172 - -0.5
5,973,209 - -0.5
5,973,572 + Psyr_5034 0.28 -1.7
5,973,572 + Psyr_5034 0.28 -1.6
5,973,573 - Psyr_5034 0.28 +2.9
5,973,662 + Psyr_5034 0.35 -0.1
5,973,662 + Psyr_5034 0.35 +0.0
5,973,662 + Psyr_5034 0.35 +0.4
5,973,662 + Psyr_5034 0.35 -0.1
5,973,663 - Psyr_5034 0.35 -0.7
5,973,663 - Psyr_5034 0.35 -1.6
5,973,663 - Psyr_5034 0.35 -2.9
5,973,663 - Psyr_5034 0.35 +1.1
5,973,663 - Psyr_5034 0.35 +0.5
5,973,672 - Psyr_5034 0.36 -1.5
5,973,672 - Psyr_5034 0.36 -1.7
5,973,672 - Psyr_5034 0.36 -1.4
5,973,695 + Psyr_5034 0.37 -0.7
5,973,695 + Psyr_5034 0.37 -0.2
5,973,695 + Psyr_5034 0.37 -2.6
5,973,695 + Psyr_5034 0.37 -0.0
5,973,696 - Psyr_5034 0.37 +0.3
5,973,696 - Psyr_5034 0.37 -0.1
5,973,696 - Psyr_5034 0.37 -0.4
5,973,696 - Psyr_5034 0.37 -0.7
5,973,696 - Psyr_5034 0.37 -1.8
5,973,773 + Psyr_5034 0.43 -1.1
5,973,774 - Psyr_5034 0.43 -1.5
5,973,992 + Psyr_5034 0.60 -0.6
5,973,992 + Psyr_5034 0.60 -0.8
5,973,992 + Psyr_5034 0.60 -0.8
5,973,992 + Psyr_5034 0.60 +0.1
5,973,993 - Psyr_5034 0.60 -1.7
5,973,993 - Psyr_5034 0.60 -2.8
5,973,993 - Psyr_5034 0.60 -0.2
5,974,218 - Psyr_5034 0.76 -0.4
5,974,281 + Psyr_5034 0.81 -1.1
5,974,281 + Psyr_5034 0.81 -1.1
5,974,281 + Psyr_5034 0.81 +0.4
5,974,281 + Psyr_5034 0.81 -1.5
5,974,281 + Psyr_5034 0.81 -3.4
5,974,281 + Psyr_5034 0.81 -1.1
5,974,282 - +0.5
5,974,282 - Psyr_5034 0.81 -1.7
5,974,412 + -3.4
5,974,412 + -1.5
5,974,412 + -1.1
5,974,412 + -1.5
5,974,412 + -0.1
5,974,412 + -2.1
5,974,413 - -1.2
5,974,413 - -2.3
5,974,688 + +0.3
5,974,688 + +0.1
5,974,688 + -0.5
5,974,688 + +0.0
5,974,689 - -1.4
5,974,689 - +1.0
5,974,689 - -1.1
5,974,689 - -0.5
5,974,689 - -0.3
5,974,689 - +0.4
5,975,099 + Psyr_5035 0.44 -0.4
5,975,099 + Psyr_5035 0.44 +1.6
5,975,100 - Psyr_5035 0.44 -0.6
5,975,100 - Psyr_5035 0.44 -0.2
5,975,162 + Psyr_5035 0.51 -2.9
5,975,163 - Psyr_5035 0.51 +1.5
5,975,163 - Psyr_5035 0.51 +0.3
5,975,163 - Psyr_5035 0.51 -1.4
5,975,163 - Psyr_5035 0.51 -0.9
5,975,216 + Psyr_5035 0.57 -0.5
5,975,216 + Psyr_5035 0.57 +0.3
5,975,216 + Psyr_5035 0.57 +0.2
5,975,217 - Psyr_5035 0.57 +0.4
5,975,217 - Psyr_5035 0.57 +0.1
5,975,217 - Psyr_5035 0.57 +0.0
5,975,217 - Psyr_5035 0.57 +0.5
5,975,217 - Psyr_5035 0.57 -0.5
5,975,217 - Psyr_5035 0.57 +0.3
5,975,217 - Psyr_5035 0.57 +0.4
5,975,217 - Psyr_5035 0.57 -0.7
5,975,217 - Psyr_5035 0.57 +0.5
5,975,369 + Psyr_5035 0.74 -0.5
5,975,370 - Psyr_5035 0.74 +0.4
5,975,370 - Psyr_5035 0.74 -0.1
5,975,370 - Psyr_5035 0.74 +0.9
5,975,370 - Psyr_5035 0.74 -0.3
5,975,387 + Psyr_5035 0.76 +0.9
5,975,387 + Psyr_5035 0.76 -2.1
5,975,388 - Psyr_5035 0.76 -0.8
5,975,388 - Psyr_5035 0.76 +0.8
5,975,388 - Psyr_5035 0.76 +0.2
5,975,388 - Psyr_5035 0.76 +1.6
5,975,398 + Psyr_5035 0.77 +0.3
5,975,398 + Psyr_5035 0.77 +0.4
5,975,399 - Psyr_5035 0.77 +2.3
5,975,399 - Psyr_5035 0.77 -0.3

Or see this region's nucleotide sequence